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Publications (2011 ~ 2015)

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* Authors contributed equally to the article

Impact Factors: 2022 Journal Citation Reports (Clarivate Analytics, June 2023)

PMID: National Center for Biotechnology Information (NCBI) Pubmed ID

2015 (6 articles)Top ⇪

Leiboff S, X Li, HC Hu, N Todt, J Yang, X Li, X Yu, GJ Muehlbauer, MCP Timmermans, J Yu, PS Schnable, MJ Scanlon (2015) Genetic control of morphometric diversity in the maize shoot apical meristem. Nat Commun, 6: 8974. doi:10.1038/ncomms9974 (Epub 2015 Nov 20; Selected as an Editors' Choice by MaizeGDB, 01/2016)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 26584889 | Cited 53 Times | Impact Factor: 16.6 | 20 November 2015 ]
Yang J*, H Jiang*, CT Yeh, J Yu, JA Jeddeloh, D Nettleton, PS Schnable (2015) Extreme-phenotype genome-wide association study (XP-GWAS): a method for identifying trait-associated variants by sequencing pools of individuals selected from a diversity panel. Plant J, 84(3): 587-596. doi:10.1111/tpj.13029 (Selected as an Editors' Choice by MaizeGDB, 11/2015)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 26386250 | Cited 63 Times | Impact Factor: 7.2 | 23 October 2015 ]
Mester DI, YI Ronin, PS Schnable, S Aluru, AB Korol (2015) Fast and accurate construction of ultra-dense consensus genetic maps using evolution strategy optimization. PLoS One, 10(4): e0122485. doi:10.1371/journal.pone.0122485

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 25867943 | Impact Factor: 3.7 | 13 April 2015 ]
Thompson AM, J Yu, MCP Timmermans, PS Schnable, JE Crants, MJ Scanlon, GJ Muehlbauer (2015) Diversity of maize shoot apical meristem architecture and its relationship to plant morphology. G3 (Bethesda), 5(5): 819-827. doi:10.1534/g3.115.017541 (Early Online March 5, 2015)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 25748433 | Impact Factor: 2.6 | 5 March 2015 ]
Tang H, X Zhang, C Miao, J Zhang, R Ming, JC Schnable, PS Schnable, E Lyons, J Lu (2015) ALLMAPS: robust scaffold ordering based on multiple maps. Genome Biol, 16(3). doi:10.1186/s13059-014-0573-1

[ Abstract | Full Text PDF | PMID: 25583564 | Cited 225 Times | Impact Factor: 12.3 | 13 January 2015 ]
Li L*, S Hill-Skinner*, S Liu, D Beuchle, HM Tang, CT Yeh, D Nettleton, PS Schnable (2015) The maize brown midrib4 (bm4) gene encodes a functional folylpolyglutamate synthase. Plant J, 81(3): 493-504. doi:10.1111/tpj.12745

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 25495051 | Impact Factor: 7.2 | 9 January 2015 ]

2014 (8 articles)Top ⇪

Paschold A, NB Larson, C Marcon, JC Schnable, CT Yeh, C Lanz, D Nettleton, HP Piepho, PS Schnable, F Hochholdinger (2014) Nonsyntenic genes drive highly dynamic complementation of gene expression in maize hybrids. Plant Cell, 26(10): 3939-3948. doi:10.1105/tpc.114.130948

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 25315323 | Cited 50 Times | Impact Factor: 12.0 | 14 October 2014 ]
Zhang Y, A Paschold, C Marcon, S Liu, H Tai, J Nestler, CT Yeh, N Opitz, C Lanz, PS Schnable, F Hochholdinger (2014) The Aux/IAA gene rum1 involved in seminal and lateral root formation controls vascular patterning in maize (Zea mays L.) primary roots. J Exp Bot, 65(17): 4919-4930. doi:10.1093/jxb/eru249

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 24928984 | Impact Factor: 6.9 | 13 June 2014 ]
Nestler J*, S Liu*, TJ Wen, A Paschold, C Marcon, HM Tang, D Li, L Li, RB Meeley, H Sakai, W Bruce, PS Schnable, F Hochholdinger (2014) Roothairless5, which functions in maize (Zea mays L.) root hair initiation and elongation encodes a monocot-specific NADPH oxidase. Plant J, 79(5): 729-740. doi:10.1111/tpj.12578 (Selected as an Editors' Choice by MaizeGDB, 07/2014)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 24902980 | Impact Factor: 7.2 | 28 May 2014 ]
Thompson AM, JE Crants, PS Schnable, J Yu, MCP Timmermans, NM Springer, MJ Scanlon, GJ Muehlbauer (2014) Genetic control of maize shoot apical meristem architecture. G3 (Bethesda), 4(7): 1327-1337. doi:10.1534/g3.114.011940

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 24855316 | Impact Factor: 2.6 | 22 May 2014 ]
Wang X, J Chen, Z Xie, S Liu, TM Nolan, H Ye, M Zhang, H Guo, PS Schnable, Z Li, Y Yin (2014) Histone lysine methyltransferase SDG8 is involved in brassinosteroid-regulated gene expression in Arabidopsis thaliana. Mol Plant, 7(8): 1303-1315. doi:10.1093/mp/ssu056

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 24838002 | Cited 51 Times | Impact Factor: 27.5 | 29 April 2014 ]
Li L, SR Eichten, R Shimizu, KA Petsch, CT Yeh, W Wu, AM Chettoor, SA Givan, RA Cole, JE Fowler, MMS Evans, MJ Scanlon, J Yu, PS Schnable, MCP Timmermans, NM Springer, GJ Muehlbauer (2014) Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biol, 15(2): R40. doi:10.1186/gb-2014-15-2-r40 (Selected as an Editors' Choice by MaizeGDB, 07/2014)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 24576388 | Cited 330 Times | Impact Factor: 12.3 | 27 February 2014 ]
Cai W, C Wang, Y Li, C Yao, L Shen, S Liu, X Bao, PS Schnable, J Girton, J Johansen, KM Johansen (2014) Genome-wide analysis of regulation of gene expression and H3K9me2 distribution by JIL-1 kinase mediated histone H3S10 phosphorylation in Drosophila. Nucleic Acids Res, 42(9): 5456-5467. doi:10.1093/nar/gku173 (Epub 2014 Mar 5)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 24598257 | Impact Factor: 14.9 | 11 February 2014 ]
Tang HM*, S Liu*, S Hill-Skinner, W Wu, D Reed, CT Yeh, D Nettleton, PS Schnable (2014) The maize brown midrib2 (bm2) gene encodes a methylenetetrahydrofolate reductase that contributes to lignin accumulation. Plant J, 77(3): 380-392. doi:10.1111/tpj.12394

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 24286468 | Impact Factor: 7.2 | 10 January 2014 ]

2013 (6 articles)Top ⇪

Li L*, D Li*, S Liu, X Ma, CR Dietrich, HC Hu, G Zhang, Z Liu, J Zheng, G Wang, PS Schnable (2013) The maize glossy13 gene, cloned via BSR-Seq and Seq-Walking encodes a putative ABC transporter required for the normal accumulation of epicuticular waxes. PLoS One, 8(12): e82333. doi:10.1371/journal.pone.0082333

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 24324772 | Cited 66 Times | Impact Factor: 3.7 | 6 December 2013 ]
Soltis DE, MA Gitzendanner, G Stull, M Chester, A Chanderbali, S Chamala, IE Jordon-Thaden, PS Soltis, PS Schnable, WB Barbazuk (2013) The potential of genomics in plant systematics. Taxon, 62(2): 886-898. doi:10.12705/625.13

[ Abstract | Full Text PDF | Cited 62 Times | Impact Factor: 3.4 | 22 October 2013 ]
Liu S, AP Hsia, PS Schnable (2013) Digestion-ligation-amplification (DLA): a simple genome walking method to amplify unknown sequences flanking mutator (Mu) transposons and thereby facilitate gene cloning. Methods Mol Biol, 1057: 167-176. doi:10.1007/978-1-62703-568-2_12

[ Abstract | Full Text PDF (External) | PMID: 23918428 | 10 September 2013 ]
Muthreich N, C Majer, M Beatty, A Paschold, A Schützenmeister, Y Fu, WA Malik, PS Schnable, HP Piepho, H Sakai, F Hochholdinger (2013) Comparative transcriptome profiling of maize coleoptilar nodes during shoot-borne root initiation. Plant Physiol, 163(1): 419-430. doi:10.1104/pp.113.221481

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 23843603 | Impact Factor: 7.4 | 10 July 2013 ]
Schnable PS, NM Springer (2013) Progress toward understanding heterosis in crop plants. Annu Rev Plant Biol, 64: 71-88. doi:10.1146/annurev-arplant-042110-103827

[ Abstract | Full Text PDF (External) | PMID: 23394499 | Cited 331 Times | Impact Factor: 23.9 | 6 February 2013 ]
Li L, KA Petsch, R Shimizu, S Liu, WW Xu, K Ying, J Yu, MJ Scanlon, PS Schnable, MCP Timmermans, NM Springer, GJ Muehlbauer (2013) Mendelian and non-mendelian regulation of gene expression in maize. PLoS Genet, 9(1): e1003202. doi: 10.1371/journal.pgen.1003202 (Epub: 2013 Jan 17; Selected as an Editors' Choice by MaizeGDB, 02/2013; "Recommended" by the Faculty of 1000 Biology)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 23341782 | Cited 79 Times | Impact Factor: 4.5 | 17 January 2013 ]

2012 (11 articles)Top ⇪

Eichten SR, NA Ellis, I Makarevitch, CT Yeh, JI Gent, L Guo, KM McGinnis, X Zhang, PS Schnable, MW Vaughn, RK Dawe, NM Springer (2012) Spreading of heterochromatin is limited to specific families of maize retrotransposons. PLoS Genet, 8(12): e1003127. doi:10.1371/journal.pgen.1003127 ("Recommended" by the Faculty of 1000 Biology)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 23271981 | Cited 144 Times | Impact Factor: 4.5 | 13 December 2012 ]
Paschold A*, Y Jia*, C Marcon, S Lund, NB Larson, CT Yeh, S Ossowski, C Lanz, D Nettleton, PS Schnable, F Hochholdinger (2012) Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents. Genome Res, 22(12): 2445-2454. doi:10.1101/gr.138461.112

[ Abstract | Full Text PDF | Supplemental Materials | Press Release | PMID: 23086286 | Cited 123 Times | Impact Factor: 7.0 | 19 October 2012 ]
Liu S, K Ying, CT Yeh, J Yang, RA Swanson-Wagner, W Wu, T Richmond, DJ Gerhardt, J Lai, NM Springer, D Nettleton, JA Jeddeloh, PS Schnable (2012) Changes in genome content generated via segregation of non-allelic homologs. Plant J, 72(3): 390-399. doi:10.1111/j.1365-313X.2012.05087.x ("Recommended" by the Faculty of 1000 Biology)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 22731681 | Impact Factor: 7.2 | 30 August 2012 ]
Takacs EM, J Li, C Du, L Ponnala, D Janick-Buckner, J Yu, GJ Muehlbauer, PS Schnable, MCP Timmermans, Q Sun, D Nettleton, MJ Scanlon (2012) Ontogeny of the maize shoot apical meristem. Plant Cell, 24(8): 3219-3234. doi:10.1105/tpc.112.099614 (Selected as an Editors' Choice by MaizeGDB, 10/2012; Selected by journal editors for "in brief" highlight; "Recommended" by the Faculty of 1000 Biology)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 22911570 | Cited 71 Times | Impact Factor: 12.0 | 28 August 2012 ]
Li X, C Zhu, CT Yeh, W Wu, EM Takacs, KA Petsch, F Tian, G Bai, ES Buckler, GJ Muehlbauer, MCP Timmermans, MJ Scanlon, PS Schnable, J Yu (2012) Genic and nongenic contributions to natural variation of quantitative traits in maize. Genome Res, 22(12): 2436-2444. doi:10.1101/gr.140277.112 (Selected as an Editors' Choice by MaizeGDB, 08/2012)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 22701078 | Cited 106 Times | Impact Factor: 7.0 | 7 June 2012 ]
Zhang X*, RN Douglas*, J Strable, M Lee, B Buckner, D Janick-Buckner, PS Schnable, MCP Timmermans, MJ Scanlon (2012) PUNCTATE VASCULAR EXPRESSION1 is a novel maize gene required for leaf pattern formation that functions downstream of the trans-acting small interfering RNA pathway. Plant Physiol, 159(4): 1453-1462. doi:10.1104/pp.111.192419 (Selected as an Editors' Choice by MaizeGDB, 07/2012)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 22669891 | Impact Factor: 7.4 | 21 May 2012 ]
Lin Z, X Li, LM Shannon, CT Yeh, ML Wang, G Bai, Z Peng, J Li, HN Trick, TE Clemente, J Doebley, PS Schnable, MR Tuinstra, TT Tesso, FF White, J Yu (2012) Parallel domestication of the Shattering1 genes in cereals. Nat Genet, 44(6): 720-724. doi:10.1038/ng.2281 (Epub: 13 May 2012; Selected as an Editors' Choice by MaizeGDB, 07/2012; "Recommended" by the Faculty of 1000 Biology)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 22581231 | Cited 314 Times | Impact Factor: 30.8 | 13 May 2012 ]
Liu S, CT Yeh, HM Tang, D Nettleton, PS Schnable (2012) Gene mapping via Bulked Segregant RNA-Seq (BSR-Seq). PLoS One, 7(5): e36406. doi:10.1371/journal.pone.0036406 (Selected as an Editors' Choice by MaizeGDB, 06/2012; Among the top 10% most cited PLOS ONE articles)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 22586469 | Cited 243 Times | Impact Factor: 3.7 | 7 May 2012 ]
Ronin YI, DI Mester, D Minkov, R Belotserkovski, BN Jackson, PS Schnable, S Aluru, AB Korol (2012) Two-phase analysis in consensus genetic mapping. G3 (Bethesda), 2(5): 537-549. doi:10.1534/g3.112.002428

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 22670224 | Impact Factor: 2.6 | 1 May 2012 ]
Buggs RJA, S Chamala, W Wu, JA Tate, PS Schnable, DE Soltis, PS Soltis, WB Barbazuk (2012) Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin. Curr Biol, 22(3): 248-252. doi:10.1016/j.cub.2011.12.027

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 22264605 | Cited 141 Times | Impact Factor: 9.2 | 7 February 2012 ]
Buggs RJA, S Renny-Byfield, M Chester, IE Jordon-Thaden, LF Viccini, S Chamala, AR Leitch, PS Schnable, WB Barbazuk, PS Soltis, DE Soltis (2012) Next-generation sequencing and genome evolution in allopolyploids. Am J Bot, 99(2): 372-382. doi:10.3732/ajb.1100395

[ Abstract | Full Text PDF | PMID: 22268220 | Cited 58 Times | Impact Factor: 3.0 | 1 February 2012 ]

2011 (7 articles)Top ⇪

Waters AJ*, I Makarevitch*, SR Eichten*, RA Swanson-Wagner, CT Yeh, WW Xu, PS Schnable, MW Vaughn, M Gehring, NM Springer (2011) Parent-of-origin effects on gene expression and DNA methylation in the Maize endosperm. Plant Cell, 23(12): 4221-4233. doi:10.1105/tpc.111.092668

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 22198147 | Cited 184 Times | Impact Factor: 12.0 | 23 December 2011 ]
Eichten SR*, RA Swanson-Wagner*, JC Schnable, AJ Waters, PJ Hermanson, S Liu, CT Yeh, Y Jia, K Gendler, M Freeling, PS Schnable, MW Vaughn, NM Springer (2011) Heritable epigenetic variation among maize inbreds. PLoS Genet, 7(11): e1002372. doi:10.1371/journal.pgen.1002372 (Selected as an Editors' Choice by MaizeGDB, 01/2012; "Recommended" by the Faculty of 1000 Biology)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 22125494 | Cited 149 Times | Impact Factor: 4.5 | 17 November 2011 ]
Eichten SR, JM Foerster, N de Leon, K Ying, CT Yeh, S Liu, JA Jeddeloh, PS Schnable, SM Kaeppler, NM Springer (2011) B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize. Plant Physiol, 156(4): 1679-1690. doi:10.1104/pp.111.174748 (Selected as an Editors' Choice by MaizeGDB, 09/2011)

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 21705654 | Cited 84 Times | Impact Factor: 7.4 | 1 August 2011 ]
Koesterke L, D Stanzione, MW Vaughn, SM Welch, W Kusnierczyk, J Yang, CT Yeh, D Nettleton, PS Schnable (2011) An efficient and scalable implementation of SNP-pair interaction testing for genetic association studies. IEEE International Workshop on High Performance Computational Biology. doi:10.1109/IPDPS.2011.190 (2011 IEEE International Symposium)

[ Abstract | Full Text PDF | 16 May 2011 ]
Buggs RJA, L Zhang, N Miles, JA Tate, L Gao, W Wu, PS Schnable, WB Barbazuk, PS Soltis, DE Soltis (2011) Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant. Curr Biol, 21(7): 551-556. doi:10.1016/j.cub.2011.02.016

[ Abstract | Full Text PDF | Supplemental Materials | PMID: 21419627 | Cited 170 Times | Impact Factor: 9.2 | 17 March 2011 ]
Barbazuk WB, PS Schnable (2011) SNP discovery by transcriptome pyrosequencing. Methods Mol Biol, 729: 225-246. doi:10.1007/978-1-61779-065-2_15

[ Abstract | Full Text PDF | PMID: 21365494 | 2 March 2011 ]
Feuillet C, JE Leach, J Rogers, PS Schnable, K Eversole (2011) Crop genome sequencing: lessons and rationales. Trends Plant Sci, 16(2): 77-88. doi:10.1016/j.tplants.2010.10.005

[ Abstract | Full Text PDF | PMID: 21081278 | Cited 263 Times | Impact Factor: 20.5 | 17 November 2010 ]