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Publications (2006 ~ 2010)

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* Authors contributed equally to the article
Impact Factors: 2018 Journal Citation Reports® (Clarivate Analytics, June 2019)
2010 (8 articles)Top ⇪
  • Fu Y*, NM Springer*, K Ying*, CT Yeh, AL Iniguez, T Richmond, W Wu, WB Barbazuk, D Nettleton, JA Jeddeloh, PS Schnable (2010) High-resolution genotyping via whole genome hybridizations to microarrays containing long oligonucleotide probes. PLoS One, 5(12): e14178. doi:10.1371/journal.pone.0014178
  • Lai J*, R Li*, X Xu*, W Jin*, M Xu*, H Zhao, Z Xiang, W Song, K Ying, M Zhang, Y Jiao, P Ni, J Zhang, D Li, X Guo, K Ye, M Jian, B Wang, H Zheng, H Liang, X Zhang, S Wang, S Chen, J Li, Y Fu, NM Springer, H Yang, J Wang, J Dai, PS Schnable, J Wang (2010) Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet, 42(11): 1027-1030. doi:10.1038/ng.684 (Cover image; "Recommended" by the Faculty of 1000 Biology)
  • Jackson BG, M Regennitter, X Yang, PS Schnable, S Aluru (2010) Parallel de novo assembly of large genomes from high-throughput short reads. IEEE International Symposium on Parallel & Distributed Processing (IPDPS), Atlanta, GA, 2010, pp:1-10. doi:10.1109/IPDPS.2010.5470397
  • Vogel JP, DF Garvin, TC Mockler, J Schmutz, D Rokhsar, MW Bevan, K Barry, S Lucas, M Harmon-Smith, K Lail, H Tice, J Grimwood, N McKenzie, N Huo, YQ Gu, GR Lazo, OD Anderson, FM You, MC Luo, J Dvorak, J Wright, M Febrer, D Idziak, R Hasterok, E Lindquist, M Wang, SE Fox, HD Priest, SA Filichkin, SA Givan, DW Bryant, JH Chang, H Wu, W Wu, AP Hsia, PS Schnable, A Kalyanaraman, WB Barbazuk, TP Michael, SP Hazen, JN Bragg, D Laudencia-Chingcuanco, Y Weng, G Haberer, M Spannagl, K Mayer, T Rattei, T Mitros, SJ Lee, JKC Rose, LA Mueller, TL York, T Wicker, JP Buchmann, J Tanskanen, AH Schulman, H Gundlach, A Costa de Oliveira, L da C. Maia, W Belknap, N Jiang, J Lai, L Zhu, J Ma, C Sun, E Pritham, J Salse, F Murat, M Abrouk, R Bruggmann, J Messing, N Fahlgren, CM Sullivan, JC Carrington, EJ Chapman, GD May, J Zhai, M Ganssmann, SGR Gurazada, M German, BC Meyers, PJ Green, L Tyler, J Wu, J Thomson, S Chen, HV Scheller, J Harholt, P Ulvskov, JA Kimbrel, LE Bartley, P Cao, KH Jung, MK Sharma, M Vega-Sanchez, P Ronald, CD Dardick, S Bodt, W Verelst, D Inze, M Heese, A Schnittger, X Yang, UC Kalluri, GA Tuskan, Z Hua, RD Vierstra, Y Cui, S Ouyang, Q Sun, Z Liu, A Yilmaz, E Grotewold, R Sibout, K Hematy, G Mouille, H Höfte, J Pelloux, D O'Connor, JC Schnable, S Rowe, F Harmon, CL Cass, JC Sedbrook, ME Byrne, S Walsh, J Higgins, P Li, TP Brutnell, T Unver, H Budak, H Belcram, M Charles, B Chalhoub, I Baxter « view remaining 85 authors » (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature, 463(7282): 763-768. doi:10.1038/nature08747
  • Fu Y, NM Springer, DJ Gerhardt, K Ying, CT Yeh, W Wu, RA Swanson-Wagner, M D'Ascenzo, T Millard, L Freeberg, N Aoyama, J Kitzman, D Burgess, T Richmond, TJ Albert, WB Barbazuk, JA Jeddeloh, PS Schnable (2010) Repeat subtraction-mediated sequence capture from a complex genome. Plant J, 62(5): 898-909. doi:10.1111/j.1365-313X.2010.04196.x (Epub: 4 Mar 2010; Cover image; Selected by journal editors as a "Featured Article"; Selected as an Editors' Choice by MaizeGDB, 09/2010)
  • Travers SE, Z Tang, D Caragea, KA Garrett, SH Hulbert, JE Leach, J Bai, A Saleh, AK Knapp, PA Fay, J Nippert, PS Schnable, MD Smith (2010) Variation in gene expression of Andropogon gerardii in response to altered environmental conditions associated with climate change. J Ecol, 98: 374-383. doi:10.1111/j.1365-2745.2009.01618.x
    [ Abstract | Full Text PDF | Impact Factor: 5.7 ]
  • Liu S, HD Chen, I Makarevitch, R Shirmer, SJ Emrich, CR Dietrich, WB Barbazuk, NM Springer, PS Schnable (2010) High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing. Genetics, 184(1): 19-26. doi:10.1534/genetics.109.107557 (Selected as an Editors' Choice by MaizeGDB, 04/2010)
  • Buggs RJA, S Chamala, W Wu, L Gao, GD May, PS Schnable, DE Soltis, PS Soltis, WB Barbazuk (2010) Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Mol Ecol, 19(s1): 132-146. doi:10.1111/j.1365-294X.2009.04469.x
    [ Abstract | Full Text PDF | PMID: 20331776 | Cited 106 Times | Impact Factor: 5.9 ]
2009 (16 articles)Top ⇪
  • Liu S, CR Dietrich, PS Schnable (2009) DLA-based strategies for cloning insertion mutants: cloning the gl4 locus of maize using Mu transposon tagged alleles. Genetics, 183(4): 1215-1225. doi:10.1534/genetics.109.108936 (Selected as an Editors' Choice by MaizeGDB, 11/2009)
  • Liu S, CT Yeh, T Ji, K Ying, H Wu, HM Tang, Y Fu, D Nettleton, PS Schnable (2009) Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome. PLoS Genet, 5(11): e1000733. doi:10.1371/journal.pgen.1000733 (Selected as an Editors' Choice by MaizeGDB, 12/2009)
  • Wei F*, J Zhang*, S Zhou, R He, M Schaeffer, K Collura, D Kudrna, BP Faga, M Wissotski, W Golser, SM Rock, TA Graves, RS Fulton, E Coe, PS Schnable, DC Schwartz, D Ware, SW Clifton, RK Wilson, RA Wing (2009) The physical and genetic framework of the maize B73 genome. PLoS Genet, 5(11): e1000715. doi:10.1371/journal.pgen.1000715 (Selected as an Editors' Choice by MaizeGDB, 12/2009)
  • Springer NM*, K Ying*, Y Fu, T Ji, CT Yeh, Y Jia, W Wu, T Richmond, J Kitzman, H Rosenbaum, AL Iniguez, WB Barbazuk, JA Jeddeloh, D Nettleton, PS Schnable (2009) Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet, 5(11): e1000734. doi:10.1371/journal.pgen.1000734 (Selected as an Editors' Choice by MaizeGDB, 12/2009)
  • Swanson-Wagner RA, R DeCook, Y Jia, T Bancroft, T Ji, X Zhao, D Nettleton, PS Schnable (2009) Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids. Science, 326(5956): 1118-1120. doi:10.1126/science.1178294 (A commentary on this manuscript solicited by the editors of Science and written by C. Feuillet and K. Eversole was provided in 326: 1071-1072; Selected as an Editors' Choice by MaizeGDB, 12/2009; "Recommended" by the Faculty of 1000 Biology)
  • Wei F, JC Stein, C Liang, J Zhang, RS Fulton, RS Baucom, E De Paoli, S Zhou, L Yang, Y Han, S Pasternak, A Narechania, L Zhang, CT Yeh, K Ying, DH Nagel, K Collura, D Kudrna, J Currie, J Lin, H Kim, A Angelova, G Scara, M Wissotski, W Golser, L Courtney, SS Kruchowski, TA Graves, SM Rock, S Adams, LA Fulton, C Fronick, W Courtney, M Kramer, L Spiegel, L Nascimento, A Kalyanaraman, C Chaparro, JM Deragon, P San Miguel, N Jiang, SR Wessler, PJ Green, Y Yu, DC Schwartz, BC Meyers, JL Bennetzen, RA Martienssen, WR McCombie, S Aluru, SW Clifton, PS Schnable, D Ware, RK Wilson, RA Wing « view remaining 5 authors » (2009) Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS Genet, 5(11): e1000728. doi:10.1371/journal.pgen.1000728 (Selected as an Editors' Choice by MaizeGDB, 12/2009)
  • Jia Y, DR Lisch, K Ohtsu, MJ Scanlon, D Nettleton, PS Schnable (2009) Loss of RNA-dependent RNA Polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs. PLoS Genet, 5(11): e1000737. doi:10.1371/journal.pgen.1000737 (Selected as an Editors' Choice by MaizeGDB, 12/2009)
  • Schnable PS*, D Ware*, RS Fulton, JC Stein, F Wei, S Pasternak, C Liang, J Zhang, LA Fulton, TA Graves, P Minx, AD Reily, L Courtney, SS Kruchowski, C Tomlinson, C Strong, K Delehaunty, C Fronick, W Courtney, SM Rock, E Belter, F Du, K Kim, RM Abbott, M Cotton, A Levy, P Marchetto, K Ochoa, SM Jackson, B Gillam, W Chen, L Yan, J Higginbotham, M Cardenas, J Waligorski, E Applebaum, L Phelps, J Falcone, K Kanchi, T Thane, A Scimone, N Thane, J Henke, T Wang, J Ruppert, N Shah, K Rotter, J Hodges, E Ingenthron, M Cordes, S Kohlberg, J Sgro, B Delgado, K Mead, A Chinwalla, S Leonard, K Crouse, K Collura, D Kudrna, J Currie, R He, A Angelova, S Rajasekar, T Mueller, R Lomeli, G Scara, A Ko, K Delaney, M Wissotski, G Lopez, D Campos, M Braidotti, E Ashley, W Golser, H Kim, S Lee, J Lin, Z Dujmic, W Kim, J Talag, A Zuccolo, C Fan, A Sebastian, M Kramer, L Spiegel, L Nascimento, T Zutavern, B Miller, C Ambroise, S Muller, W Spooner, A Narechania, L Ren, S Wei, S Kumari, BP Faga, MJ Levy, L McMahan, P Van Buren, MW Vaughn, K Ying, CT Yeh, SJ Emrich, Y Jia, A Kalyanaraman, AP Hsia, WB Barbazuk, RS Baucom, TP Brutnell, NC Carpita, C Chaparro, JM Chia, JM Deragon, JC Estill, Y Fu, JA Jeddeloh, Y Han, H Lee, P Li, DR Lisch, S Liu, Z Liu, DH Nagel, MC McCann, P San Miguel, AM Myers, D Nettleton, J Nguyen, BW Penning, L Ponnala, KL Schneider, DC Schwartz, A Sharma, C Soderlund, NM Springer, Q Sun, H Wang, M Waterman, R Westerman, TK Wolfgruber, L Yang, Y Yu, L Zhang, S Zhou, Q Zhu, JL Bennetzen, RK Dawe, J Jiang, N Jiang, GG Presting, SR Wessler, S Aluru, RA Martienssen, SW Clifton, WR McCombie, RA Wing, RK Wilson « view remaining 107 authors » (2009) The B73 maize genome: complexity, diversity, and dynamics. Science, 326(5956): 1112-1115. doi:10.1126/science.1178534 (Cover image; a commentary on this manuscript solicited by journal editors and written by C. Feuillet and K. Eversole was provided in 326: 1071-1072; cited in Wikipedia: http://en.wikipedia.org/wiki/Maize; selected as an Editors' Choice by MaizeGDB, 12/2009; selected as a "must read" by the Faculty of 1000 Biology)
  • Chou HH, A Trisiriroj, S Park, YI Hsing, PC Ronald, PS Schnable (2009) Direct calibration of PICKY-designed microarrays. BMC Bioinformatics, 10: 347. doi:10.1186/1471-2105-10-347
    [ Abstract | Full Text PDF | PMID: 19849862 | Impact Factor: 2.5 ]
  • Soltis DE, RJA Buggs, WB Barbazuk, PS Schnable, PS Soltis (2009) On the origins of species: does evolution repeat itself in polyploid populations of independent origin?. Cold Spring Harb Symp Quant Biol, 74: 215-223. doi:10.1101/sqb.2009.74.007
    [ Abstract | Full Text PDF | PMID: 19687140 | Impact Factor: 3.5 ]
  • Scanlon MJ, K Ohtsu, MCP Timmermans, PS Schnable (2009) Laser microdissection-mediated isolation and in vitro transcriptional amplification of plant RNA. Curr Protoc Mol Biol, Chapter 25(Unit 25A.3). doi:10.1002/0471142727.mb25a03s87
    [ Abstract | Full Text PDF | PMID: 19575479 | Impact Factor: 2.8 ]
  • Brooks III L*, J Strable*, X Zhang, K Ohtsu, R Zhou, A Sarkar, S Hargreaves, RJ Elshire, D Eudy, T Pawlowska, D Ware, D Janick-Buckner, B Buckner, MCP Timmermans, PS Schnable, D Nettleton, MJ Scanlon (2009) Microdissection of shoot meristem functional domains. PLoS Genet, 5(5): e1000476. doi:10.1371/journal.pgen.1000476 (Epub: 8 May 2009)
  • Wei Y, M Lin, DJ Oliver, PS Schnable (2009) The roles of aldehyde dehydrogenases (ALDHs) in the PDH bypass of arabidopsis. BMC Biochem, 10: 7. doi:10.1186/1471-2091-10-7
  • Nogueira FTS*, DH Chitwood*, S Madi, K Ohtsu, PS Schnable, MJ Scanlon, MCP Timmermans (2009) Regulation of small RNA accumulation in the maize shoot apex. PLoS Genet, 5(1): e1000320. doi:10.1371/journal.pgen.1000320 (Selected as an Editors' Choice by MaizeGDB, 06/2009)
  • Shimizu R*, J Ji*, E Kelsey, K Ohtsu, PS Schnable, MJ Scanlon (2009) Tissue specificity and evolution of meristematic WOX3 function. Plant Physiol, 149(2): 841-850. doi:10.1104/pp.108.130765 ("Recommended" by the Faculty of 1000 Biology)
  • Jackson BN, PS Schnable, S Aluru (2009) Parallel short sequence assembly of transcriptomes. BMC Bioinformatics, 10(Suppl 1): S14. doi:10.1186/1471-2105-10-S1-S14
    [ Abstract | Full Text PDF | PMID: 19208113 | Impact Factor: 2.5 ]
2008 (8 articles)Top ⇪
2007 (12 articles)Top ⇪
2006 (7 articles)Top ⇪