Home
Schnable Lab
Microarray Facility
Blast Chips
Spot Search
Download
Annotation Search
Tutorials
BLAST Search
[
Download FASTA files
]
Choose program to use and database to search:
Program
blastn
tblastn
tblastx
Chip
SAM Chips combined
SAM1.1(GPL3333)
SAM2.0(GPL2572)
SAM3.0(GPL3538)
SAM1.2(GPL4521)
SAM1.1(GPL3333)-MEC_P98-Mar06
SAM2.0(GPL2572)-MEC_P98-Mar06
SAM3.0(GPL3538)-MEC_P98-Mar06
SAM1.2(GPL4521)-MEC_P98-Mar06
Enter sequence below in FASTA format
Or load it from disk
Set subsequence: From
To
Advanced
The query sequence is filtered for low complexity regions by default.
Filter
Low complexity
Mask for lookup table only
Expect
0.0001
0.01
1
10
100
1000
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Perform ungapped alignment
Query Genetic Codes (blastx only)
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only)
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Frame shift penalty for blastx
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
25
30
50
1000
No OOF
Other advanced options:
Graphical Overview
Alignment view
Pairwise
master-slave with identities
master-slave without identities
flat master-slave with identities
flat master-slave without identities
BLAST XML
Hit Table
Descriptions
0
10
50
100
250
500
Alignments
0
10
50
100
250
500
Color schema
No color schema
Color schema 1
Color schema 2
Color schema 3
Color schema 4
Color schema 5
Color schema 6