• Publications
    • Custom Filter

Journal Publications (2006 ~ 2010) (Showing 49 out of 157 articles)
Dr. Schnable's Google Scholar Page [ N=15,589 ]

* Authors contributed equally to the article
2010 (6 articles)↑ Top
  • Fu Y*, NM Springer*, K Ying*, CT Yeh, AL Iniguez, T Richmond, W Wu, WB Barbazuk, D Nettleton, JA Jeddeloh, PS Schnable (2010) High-resolution genotyping via whole genome hybridizations to microarrays containing long oligonucleotide probes. PLoS One, 5(12): e14178.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pone.0014178 | PMID: 21152036 ]
  • Lai J*, R Li*, X Xu*, W Jin*, M Xu*, H Zhao, Z Xiang, W Song, K Ying, M Zhang, Y Jiao, P Ni, J Zhang, D Li, X Guo, K Ye, M Jian, B Wang, H Zheng, H Liang, X Zhang, S Wang, S Chen, J Li, Y Fu, NM Springer, H Yang, J Wang, J Dai, PS Schnable, J Wang (2010) Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet, 42(11): 1027-1030. (Cover image; "Recommended" by the Faculty of 1000 Biology)

  • The International Brachypodium Initiative: Principal investigators: JP Vogel, DF Garvin, TC Mockler, J Schmutz, D Rokhsar, MW Bevan ; DNA sequencing and assembly: K Barry, S Lucas, M Harmon-Smith, K Lail, H Tice, J Schmutz (Leader), J Grimwood, N McKenzie, MW Bevan ; Pseudomolecule assembly and BAC end sequencing: N Huo, YQ Gu, GR Lazo, OD Anderson, JP Vogel (Leader), FM You, MC Luo, J Dvorak, J Wright, M Febrer, MW Bevan, D Idziak, R Hasterok, DF Garvin ; Transcriptome sequencing and analysis: E Lindquist, M Wang, SE Fox, HD Priest, SA Filichkin, SA Givan, DW Bryant, JH Chang, TC Mockler (Leader), H Wu, W Wu, AP Hsia, PS Schnable, A Kalyanaraman, WB Barbazuk, TP Michael, SP Hazen, JN Bragg, D Laudencia-Chingcuanco, JP Vogel, DF Garvin, Y Weng, N McKenzie, MW Bevan ; Gene analysis and annotation: G Haberer, M Spannagl, K Mayer (Leader), T Rattei, T Mitros, D Rokhsar, SJ Lee, JKC Rose, LA Mueller, TL York ; Repeats analysis: T Wicker (Leader), JP Buchmann, J Tanskanen, AH Schulman (Leader), H Gundlach, J Wright, MW Bevan, A Costa de Oliveira, L da C. Maia, W Belknap, YQ Gu, N Jiang, J Lai, L Zhu, J Ma, C Sun, E Pritham ; Comparative genomics: J Salse (Leader), F Murat, M Abrouk, G Haberer, M Spannagl, K Mayer, R Bruggmann, J Messing, FM You, MC Luo, J Dvorak ; Small RNA analysis: N Fahlgren, SE Fox, CM Sullivan, TC Mockler, JC Carrington, EJ Chapman, GD May, J Zhai, M Ganssmann, SGR Gurazada, M German, BC Meyers, PJ Green (Leader) ; Manual annotation and gene family analysis: JN Bragg, L Tyler, J Wu, YQ Gu, GR Lazo, D Laudencia-Chingcuanco, J Thomson, JP Vogel (Leader), SP Hazen, S Chen, HV Scheller, J Harholt, P Ulvskov, SE Fox, SA Filichkin, N Fahlgren, JA Kimbrel, JH Chang, CM Sullivan, EJ Chapman, JC Carrington, TC Mockler, LE Bartley, P Cao, KH Jung, MK Sharma, M Vega-Sanchez, P Ronald, CD Dardick, S Bodt, W Verelst, D Inze, M Heese, A Schnittger, X Yang, UC Kalluri, GA Tuskan, Z Hua, RD Vierstra, DF Garvin, Y Cui, S Ouyang, Q Sun, Z Liu, A Yilmaz, E Grotewold, R Sibout, K Hematy, G Mouille, H Höfte, TP Michael, J Pelloux, D O'Connor, JC Schnable, S Rowe, F Harmon, CL Cass, JC Sedbrook, ME Byrne, S Walsh, J Higgins, MW Bevan, P Li, TP Brutnell, T Unver, H Budak, H Belcram, M Charles, B Chalhoub, I Baxter « show all participants » (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature, 463(7282): 763-768.
  • Fu Y, NM Springer, DJ Gerhardt, K Ying, CT Yeh, W Wu, RA Swanson-Wagner, M D'Ascenzo, T Millard, L Freeberg, N Aoyama, J Kitzman, D Burgess, T Richmond, TJ Albert, WB Barbazuk, JA Jeddeloh, PS Schnable (2010) Repeat subtraction-mediated sequence capture from a complex genome. Plant J, 62(5): 898-909. (Epub: 4 Mar 2010; Cover image; Selected by journal editors as a "Featured Article"; Selected as an Editors' Choice by MaizeGDB, 9/10)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1111/j.1365-313X.2010.04196.x | PMID: 20230488 | Cited 71 times ]

  • Liu S, HD Chen, I Makarevitch, R Shirmer, SJ Emrich, CR Dietrich, WB Barbazuk, NM Springer, PS Schnable (2010) High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing. Genetics, 184(1): 19-26. (Selected as an Editors' Choice by MaizeGDB, 4/10)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1534/genetics.109.107557 | PMID: 19884313 | Cited 64 times ]
  • Buggs RJA, S Chamala, W Wu, L Gao, GD May, PS Schnable, DE Soltis, PS Soltis, WB Barbazuk (2010) Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Mol Ecol, 19(s1): 132-146.
    [ Abstract | Full Text PDF | doi:10.1111/j.1365-294X.2009.04469.x | PMID: 20331776 | Cited 103 times ]
2009 (16 articles)↑ Top
  • Liu S, CR Dietrich, PS Schnable (2009) DLA-based strategies for cloning insertion mutants: cloning the gl4 locus of maize using Mu transposon tagged alleles. Genetics, 183(4): 1215-1225. (Selected as an Editors' Choice by MaizeGDB, 11/09)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1534/genetics.109.108936 | PMID: 19805815 ]
  • Schnable PS*, D Ware*, RS Fulton, JC Stein, F Wei, S Pasternak, C Liang, J Zhang, LA Fulton, TA Graves, P Minx, AD Reily, L Courtney, SS Kruchowski, C Tomlinson, C Strong, K Delehaunty, C Fronick, W Courtney, SM Rock, E Belter, F Du, K Kim, RM Abbott, M Cotton, A Levy, P Marchetto, K Ochoa, SM Jackson, B Gillam, W Chen, L Yan, J Higginbotham, M Cardenas, J Waligorski, E Applebaum, L Phelps, J Falcone, K Kanchi, T Thane, A Scimone, N Thane, J Henke, T Wang, J Ruppert, N Shah, K Rotter, J Hodges, E Ingenthron, M Cordes, S Kohlberg, J Sgro, B Delgado, K Mead, A Chinwalla, S Leonard, K Crouse, K Collura, D Kudrna, J Currie, R He, A Angelova, S Rajasekar, T Mueller, R Lomeli, G Scara, A Ko, K Delaney, M Wissotski, G Lopez, D Campos, M Braidotti, E Ashley, W Golser, H Kim, S Lee, J Lin, Z Dujmic, W Kim, J Talag, A Zuccolo, C Fan, A Sebastian, M Kramer, L Spiegel, L Nascimento, T Zutavern, B Miller, C Ambroise, S Muller, W Spooner, A Narechania, L Ren, S Wei, S Kumari, BP Faga, MJ Levy, L McMahan, P Van Buren, MW Vaughn, K Ying, CT Yeh, SJ Emrich, Y Jia, A Kalyanaraman, AP Hsia, WB Barbazuk, RS Baucom, TP Brutnell, NC Carpita, C Chaparro, JM Chia, JM Deragon, JC Estill, Y Fu, JA Jeddeloh, Y Han, H Lee, P Li, DR Lisch, S Liu, Z Liu, DH Nagel, MC McCann, P San Miguel, AM Myers, D Nettleton, J Nguyen, BW Penning, L Ponnala, KL Schneider, DC Schwartz, A Sharma, C Soderlund, NM Springer, Q Sun, H Wang, M Waterman, R Westerman, TK Wolfgruber, L Yang, Y Yu, L Zhang, S Zhou, Q Zhu, JL Bennetzen, RK Dawe, J Jiang, N Jiang, GG Presting, SR Wessler, S Aluru, RA Martienssen, SW Clifton, WR McCombie, RA Wing, RK Wilson « view remaining 107 authors » (2009) The B73 maize genome: complexity, diversity, and dynamics. Science, 326(5956): 1112-1115. (Cover image; a commentary on this manuscript solicited by journal editors and written by C. Feuillet and K. Eversole was provided in 326: 1071-1072; cited in Wikipedia: http://en.wikipedia.org/wiki/Maize; selected as an Editors' Choice by MaizeGDB, 12/09; selected as a "must read" by the Faculty of 1000 Biology)

  • Jia Y, DR Lisch, K Ohtsu, MJ Scanlon, D Nettleton, PS Schnable (2009) Loss of RNA-dependent RNA Polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs. PLoS Genet, 5(11): e1000737. (Selected as an Editors' Choice by MaizeGDB, 12/09)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000737 | PMID: 19936292 ]
  • Wei F, JC Stein, C Liang, J Zhang, RS Fulton, RS Baucom, E De Paoli, S Zhou, L Yang, Y Han, S Pasternak, A Narechania, L Zhang, CT Yeh, K Ying, DH Nagel, K Collura, D Kudrna, J Currie, J Lin, H Kim, A Angelova, G Scara, M Wissotski, W Golser, L Courtney, SS Kruchowski, TA Graves, SM Rock, S Adams, LA Fulton, C Fronick, W Courtney, M Kramer, L Spiegel, L Nascimento, A Kalyanaraman, C Chaparro, JM Deragon, P San Miguel, N Jiang, SR Wessler, PJ Green, Y Yu, DC Schwartz, BC Meyers, JL Bennetzen, RA Martienssen, WR McCombie, S Aluru, SW Clifton, PS Schnable, D Ware, RK Wilson, RA Wing « view remaining 5 authors » (2009) Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS Genet, 5(11): e1000728. (Selected as an Editors' Choice by MaizeGDB, 12/09)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000728 | PMID: 19936048 ]
  • Swanson-Wagner RA, R DeCook, Y Jia, T Bancroft, T Ji, X Zhao, D Nettleton, PS Schnable (2009) Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids. Science, 326(5956): 1118-1120. (A commentary on this manuscript solicited by the editors of Science and written by C. Feuillet and K. Eversole was provided in 326: 1071-1072; Selected as an Editors' Choice by MaizeGDB, 12/09; "Recommended" by the Faculty of 1000 Biology)
  • Springer NM*, K Ying*, Y Fu, T Ji, CT Yeh, Y Jia, W Wu, T Richmond, J Kitzman, H Rosenbaum, AL Iniguez, WB Barbazuk, JA Jeddeloh, D Nettleton, PS Schnable (2009) Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet, 5(11): e1000734. (Selected as an Editors' Choice by MaizeGDB, 12/09)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000734 | PMID: 19956538 | Cited 309 times ]
  • Wei F, J Zhang, S Zhou, R He, M Schaeffer, K Collura, D Kudrna, BP Faga, M Wissotski, W Golser, SM Rock, TA Graves, RS Fulton, E Coe, PS Schnable, DC Schwartz, D Ware, SW Clifton, RK Wilson, RA Wing (2009) The physical and genetic framework of the maize B73 genome. PLoS Genet, 5(11): e1000715. (Selected as an Editors' Choice by MaizeGDB, 12/09)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000715 | PMID: 19936061 | Cited 83 times ]
  • Liu S, CT Yeh, T Ji, K Ying, H Wu, HM Tang, Y Fu, D Nettleton, PS Schnable (2009) Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome. PLoS Genet, 5(11): e1000733. (Selected as an Editors' Choice by MaizeGDB, 12/09)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000733 | PMID: 19936291 | Cited 130 times ]
  • Chou HH, A Trisiriroj, S Park, YI Hsing, PC Ronald, PS Schnable (2009) Direct calibration of PICKY-designed microarrays. BMC Bioinformatics, 10: 347.
    [ Abstract | Full Text PDF | doi:10.1186/1471-2105-10-347 | PMID: 19849862 ]
  • Soltis DE, RJA Buggs, WB Barbazuk, PS Schnable, PS Soltis (2009) On the origins of species: does evolution repeat itself in polyploid populations of independent origin?. Cold Spring Harb Symp Quant Biol, 74: 215-223.
    [ Abstract | Full Text PDF | doi:10.1101/sqb.2009.74.007 | PMID: 19687140 ]
  • Scanlon MJ, K Ohtsu, MCP Timmermans, PS Schnable (2009) Laser microdissection-mediated isolation and in vitro transcriptional amplification of plant RNA. Curr Protoc Mol Biol, Chapter 25(Unit 25A.3).
    [ Abstract | Full Text PDF | doi:10.1002/0471142727.mb25a03s87 | PMID: 19575479 ]
  • Brooks III L, J Strable, X Zhang, K Ohtsu, R Zhou, A Sarkar, S Hargreaves, RJ Elshire, D Eudy, T Pawlowska, D Ware, D Janick-Buckner, B Buckner, MCP Timmermans, PS Schnable, D Nettleton, MJ Scanlon (2009) Microdissection of shoot meristem functional domains. PLoS Genet, 5(5): e1000476. (Epub: 8 May 2009)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000476 | PMID: 19424435 | Cited 62 times ]
  • Wei Y, M Lin, DJ Oliver, PS Schnable (2009) The roles of aldehyde dehydrogenases (ALDHs) in the PDH bypass of arabidopsis. BMC Biochem, 10: 7.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1186/1471-2091-10-7 | PMID: 19320993 ]
  • Nogueira FTS, DH Chitwood, S Madi, K Ohtsu, PS Schnable, MJ Scanlon, MCP Timmermans (2009) Regulation of small RNA accumulation in the maize shoot apex. PLoS Genet, 5(1): e1000320. (Selected as an Editors' Choice by MaizeGDB, 6/09)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000320 | PMID: 19119413 | Cited 112 times ]
  • Shimizu R, J Ji, E Kelsey, K Ohtsu, PS Schnable, MJ Scanlon (2009) Tissue specificity and evolution of meristematic WOX3 function. Plant Physiol, 149(2): 841-850. ("Recommended" by the Faculty of 1000 Biology)
  • Jackson BN, PS Schnable, S Aluru (2009) Parallel short sequence assembly of transcriptomes. BMC Bioinformatics, 10(Suppl 1): S14.
    [ Abstract | Full Text PDF | doi:10.1186/1471-2105-10-S1-S14 | PMID: 19208113 ]
2008 (8 articles)↑ Top
  • Skibbe DS, X Wang, LA Borsuk, DA Ashlock, D Nettleton, PS Schnable (2008) Floret-specific differences in gene expression and support for the hypothesis that tapetal degeneration of Zea mays L. occurs via programmed cell death. J Genet Genomics, 35(10): 603-616.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1016/S1673-8527(08)60081-8 | PMID: 18937917 ]
  • Jung KH, CD Dardick, LE Bartley, P Cao, J Phetsom, P Canlas, YS Seo, M Shultz, S Ouyang, Q Yuan, BC Frank, E Ly, L Zheng, Y Jia, AP Hsia, K An, HH Chou, DM Rocke, GC Lee, PS Schnable, G An, CR Buell, PC Ronald (2008) Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. PLoS One, 3(10): e3337.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pone.0003337 | PMID: 18836531 | Cited 102 times ]
  • Strable J, LA Borsuk, D Nettleton, PS Schnable, EE Irish (2008) Microarray analysis of vegetative phase change in maize. Plant J, 56(6): 1045-1057.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1111/j.1365-313X.2008.03661.x | PMID: 18764925 ]
  • Lu R, GC Lee, M Shultz, CD Dardick, KH Jung, J Phetsom, Y Jia, RH Rice, Z Goldberg, PS Schnable, PC Ronald, DM Rocke (2008) Assessing probe-specific dye and slide biases in two-color microarray data. BMC Bioinformatics, 9: 314.
    [ Abstract | Full Text PDF | doi:10.1186/1471-2105-9-314 | PMID: 18638416 ]
  • Buckner B, KA Swaggart, CC Wong, HA Smith, KM Aurand, MJ Scanlon, PS Schnable, D Janick-Buckner (2008) Expression and nucleotide diversity of the maize RIK gene. J Hered, 99(4): 407-416. (Epub: 28 Feb 2008)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1093/jhered/esn013 | PMID: 18310068 ]
  • Hochholdinger F, TJ Wen, R Zimmermann, P Chimot-Marolle, O da Costa e Silva, W Bruce, KR Lamkey, U Wienand, PS Schnable (2008) The maize (Zea mays L.) roothairless3 gene encodes a putative GPI-anchored, monocot-specific, COBRA-like protein that significantly affects grain yield. Plant J, 54(5): 888-898. (Selected as an Editors' Choice by MaizeGDB, 6/08)
    [ Abstract | Full Text PDF | doi:10.1111/j.1365-313X.2008.03459.x | PMID: 18298667 | Cited 74 times ]
  • Li J, TJ Wen, PS Schnable (2008) Role of RAD51 in the repair of MuDR-induced double-strand breaks in maize (Zea mays L.). Genetics, 178(1): 57-66. (Selected as an Editors' Choice by MaizeGDB, 2/08)
    [ Abstract | Full Text PDF | doi:10.1534/genetics.107.080374 | PMID: 18202358 ]
  • Jackson BN, PS Schnable, S Aluru (2008) Consensus genetic maps as median orders from inconsistent sources. IEEE/ACM Trans Comput Biol Bioinform, 5(2): 161-171.
    [ Abstract | Full Text PDF | doi:10.1109/TCBB.2007.70221 | PMID: 18451426 ]
2007 (12 articles)↑ Top
  • Dembinsky D, K Woll, M Saleem, Y Liu, Y Fu, LA Borsuk, T Lamkemeyer, C Fladerer, J Madlung, WB Barbazuk, A Nordheim, D Nettleton, PS Schnable, F Hochholdinger (2007) Transcriptomic and proteomic analyses of pericycle cells of the maize primary root. Plant Physiol, 145(3): 575-588.
  • Ohtsu K, MB Smith, SJ Emrich, LA Borsuk, R Zhou, T Chen, X Zhang, MCP Timmermans, J Beck, B Buckner, D Janick-Buckner, D Nettleton, MJ Scanlon, PS Schnable (2007) Global gene expression analysis of the shoot apical meristem of maize (Zea Mays L.). Plant J, 52(3): 391-404. ("Recommended" by the Faculty of 1000 Biology; selected as an Editors' Choice by MaizeGDB, 10/07)
    [ Abstract | Full Text PDF | doi:10.1111/j.1365-313X.2007.03244.x | PMID: 17764504 | Cited 138 times ] Faculty1000 Recommeded Article
  • Barbazuk WB, SJ Emrich, HD Chen, L Li, PS Schnable (2007) SNP discovery via 454 transcriptome sequencing. Plant J, 51(5): 910-918. (Cited in Wikipedia: http://en.wikipedia.org/wiki/RNA-Seq)
    [ Abstract | Full Text PDF | doi:10.1111/j.1365-313X.2007.03193.x | PMID: 17662031 | Cited 415 times ]
  • Zhang X, S Madi, LA Borsuk, D Nettleton, RJ Elshire, B Buckner, D Janick-Buckner, J Beck, MCP Timmermans, PS Schnable, MJ Scanlon (2007) Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem. PLoS Genet, 3(6): e101. (Selected an Editors' Choice by MaizeGDB, 7/07)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.0030101 | PMID: 17571927 | Cited 58 times ]
  • Li J, LC Harper, I Golubovskaya, CR Wang, D Weber, RB Meeley, J McElver, B Bowen, WZ Cande, PS Schnable (2007) Functional analysis of maize RAD51 in meiosis and double-strand break repair. Genetics, 176(3): 1469-1482. (Selected by editors of Genetics as an "Issue Highlight"; selected as an Editors'Choice by MaizeGDB, 8/07)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1534/genetics.106.062604 | PMID: 17507687 ]
  • Buckner B, J Beck, K Browning, A Fritz, L Grantham, E Hoxha, Z Kamvar, A Lough, O Nikolova, PS Schnable, MJ Scanlon, D Janick-Buckner (2007) Involving undergraduates in the annotation and analysis of global gene expression studies: creation of a maize shoot apical meristem expression database. Genetics, 176(2): 741-747.
    [ Abstract | Full Text PDF | doi:10.1534/genetics.106.066472 | PMID: 17409087 ]
  • Li J, AP Hsia, PS Schnable (2007) Recent advances in plant recombination. Curr Opin Plant Biol, 10(2): 131-135. (Epub: 8 Feb 2007)
    [ Abstract | Full Text PDF | doi:10.1016/j.pbi.2007.01.007 | PMID: 17291826 ]
  • Travers SE, MD Smith, J Bai, SH Hulbert, JE Leach, PS Schnable, AK Knapp, GA Milliken, PA Fay, A Saleh, KA Garrett (2007) Ecological genomics: making the leap from model systems in the lab to native populations in the field. Front Ecol Environ, 5(1): 19-24.
    [ Abstract | Full Text PDF | doi:10.1890/1540-9295(2007)5[19:EGMTLF]2.0.CO;2 | Cited 52 times ]
  • Ohtsu K, H Takahashi, PS Schnable, M Nakazono (2007) Cell type-specific gene expression profiling in plants by using a combination of laser microdissection and high-throughput technologies. Plant Cell Physiol, 48(1): 3-7. (Epub: 5 Dec 2006)
    [ Abstract | Full Text PDF | doi:10.1093/pcp/pcl049 | PMID: 17148694 | Cited 52 times ]
  • Emrich SJ*, L Li*, TJ Wen, MD Yandeau-Nelson, Y Fu, L Guo, HH Chou, S Aluru, DA Ashlock, PS Schnable (2007) Nearly identical paralogs: implications for maize (Zea mays L.) genome evolution. Genetics, 175(1): 429-439. (Featured in Science (315:302) as in Editor's Choice: Highlights of the recent literature; Selected as an Editors' Choice by MaizeGDB, 12/06)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1534/genetics.106.064006 | PMID: 17110490 | Cited 64 times ]
  • Emrich SJ*, WB Barbazuk*, L Li, PS Schnable (2007) Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res, 17(1): 69-73. (Epub: 9 Nov 2006)
    [ Abstract | Full Text PDF | doi:10.1101/gr.5145806 | PMID: 17095711 | Cited 329 times ]
  • Kalyanaraman A, SJ Emrich, PS Schnable, S Aluru (2007) Assembling genomes on large-scale parallel computers. Journal of Parallel and Distributed Computing, 67: 1240-1255. (Special issue devoted to IPDPS best papers)
    [ Abstract | Full Text PDF | doi:10.1109/IPDPS.2006.1639259 ]
2006 (7 articles)↑ Top
  • Fu Y, TJ Wen, YI Ronin, HD Chen, L Guo, DI Mester, Y Yang, M Lee, AB Korol, DA Ashlock, PS Schnable (2006) Genetic dissection of intermated recombinant inbred lines using a new genetic map of maize. Genetics, 174(3): 1671-1683. (Epub: 1 Sep 2006)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1534/genetics.106.060376 | PMID: 16951074 | Cited 90 times ]
  • Kalyanaraman A, S Aluru, PS Schnable (2006) Turning repeats to advantage: scaffolding genomic contigs using LTR retrotransposons. Proc IEEE Comput Syst Bioinform Conf, 5: 167-178. (Conference Website)
  • Yandeau-Nelson MD, BJ Nikolau, PS Schnable (2006) Effects of trans-acting genetic modifiers on meiotic recombination across the a1-sh2 interval of maize. Genetics, 174(1): 101-112. (Epub: 2 Jul 2006; "Recommended" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | doi:10.1534/genetics.105.049270 | PMID: 16816431 ] Faculty1000 Recommeded Article
  • Yandeau-Nelson MD, Y Xia, J Li, MG Neuffer, PS Schnable (2006) Unequal sister chromatid and homolog recombination at a tandem duplication of the a1 locus in maize. Genetics, 173(4): 2211-2226. (Epub: 4 Jun 2006)
    [ Abstract | Full Text PDF | doi:10.1534/genetics.105.052712 | PMID: 16751673 ]
  • Skibbe DS, X Wang, X Zhao, LA Borsuk, D Nettleton, PS Schnable (2006) Scanning microarrays at multiple intensities enhances discovery of differentially expressed genes. Bioinformatics, 22(15): 1863-1870. (Epub: 26 May 2006)
    [ Abstract | Full Text PDF | doi:10.1093/bioinformatics/btl270 | PMID: 16731695 ]
  • Swanson-Wagner RA*, Y Jia*, R DeCook, LA Borsuk, D Nettleton, PS Schnable (2006) All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. PNAS, 103(18): 6805-6810. (Epub: 25 Apr 2006; "Recommended" by the Faculty of 1000 Biology; Identified by Thomson Reuters Scientific's Essential Science Indicators as the most highly cited paper in the research front map "On Applying Genome-Wide Selection"; podcast solicited by ScienceWatch.com: Download MP3 (5.7 MB) | WMA (2.5 MB))
    [ Abstract | Full Text PDF | doi:10.1073/pnas.051043010 | PMID: 16641103 | Cited 304 times ] Faculty1000 Recommeded Article
  • Maher PM, HH Chou, E Hahn, TJ Wen, PS Schnable (2006) GRAMA: genetic mapping analysis of temperature gradient capillary electrophoresis data. Theor Appl Genet, 113(1): 156-162. (Epub: 20 Apr 2006)
    [ Abstract | Full Text PDF | doi:10.1007/s00122-006-0282-6 | PMID: 16783596 ]

Nature Genetics 2010: Volume 42, Issue 11


Lai J*, R Li*, X Xu*, W Jin*, M Xu*, H Zhao, Z Xiang, W Song, K Ying, M Zhang, Y Jiao, P Ni, J Zhang, D Li, X Guo, K Ye, M Jian, B Wang, H Zheng, H Liang, X Zhang, S Wang, S Chen, J Li, Y Fu, NM Springer, H Yang, J Wang, J Dai, PS Schnable, J Wang (2010) Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet, 42(11): 1027-1030. (Cover image; "Recommended" by the Faculty of 1000 Biology)

Plant Journal 2010: Volume 62, Issue 5


Fu Y, NM Springer, DJ Gerhardt, K Ying, CT Yeh, W Wu, RA Swanson-Wagner, M D'Ascenzo, T Millard, L Freeberg, N Aoyama, J Kitzman, D Burgess, T Richmond, TJ Albert, WB Barbazuk, JA Jeddeloh, PS Schnable (2010) Repeat subtraction-mediated sequence capture from a complex genome. Plant J, 62(5): 898-909. (Epub: 4 Mar 2010; Cover image; Selected by journal editors as a "Featured Article"; Selected as an Editors' Choice by MaizeGDB, 9/10)

[ Abstract | Full Text PDF | Supplemental Materials | doi:10.1111/j.1365-313X.2010.04196.x | PMID: 20230488 | Cited 71 times ]

Science 2009: Volume 326, Issue 5956


Schnable PS*, D Ware*, RS Fulton, JC Stein, F Wei, S Pasternak, C Liang, J Zhang, LA Fulton, TA Graves, P Minx, AD Reily, L Courtney, SS Kruchowski, C Tomlinson, C Strong, K Delehaunty, C Fronick, W Courtney, SM Rock, E Belter, F Du, K Kim, RM Abbott, M Cotton, A Levy, P Marchetto, K Ochoa, SM Jackson, B Gillam, W Chen, L Yan, J Higginbotham, M Cardenas, J Waligorski, E Applebaum, L Phelps, J Falcone, K Kanchi, T Thane, A Scimone, N Thane, J Henke, T Wang, J Ruppert, N Shah, K Rotter, J Hodges, E Ingenthron, M Cordes, S Kohlberg, J Sgro, B Delgado, K Mead, A Chinwalla, S Leonard, K Crouse, K Collura, D Kudrna, J Currie, R He, A Angelova, S Rajasekar, T Mueller, R Lomeli, G Scara, A Ko, K Delaney, M Wissotski, G Lopez, D Campos, M Braidotti, E Ashley, W Golser, H Kim, S Lee, J Lin, Z Dujmic, W Kim, J Talag, A Zuccolo, C Fan, A Sebastian, M Kramer, L Spiegel, L Nascimento, T Zutavern, B Miller, C Ambroise, S Muller, W Spooner, A Narechania, L Ren, S Wei, S Kumari, BP Faga, MJ Levy, L McMahan, P Van Buren, MW Vaughn, K Ying, CT Yeh, SJ Emrich, Y Jia, A Kalyanaraman, AP Hsia, WB Barbazuk, RS Baucom, TP Brutnell, NC Carpita, C Chaparro, JM Chia, JM Deragon, JC Estill, Y Fu, JA Jeddeloh, Y Han, H Lee, P Li, DR Lisch, S Liu, Z Liu, DH Nagel, MC McCann, P San Miguel, AM Myers, D Nettleton, J Nguyen, BW Penning, L Ponnala, KL Schneider, DC Schwartz, A Sharma, C Soderlund, NM Springer, Q Sun, H Wang, M Waterman, R Westerman, TK Wolfgruber, L Yang, Y Yu, L Zhang, S Zhou, Q Zhu, JL Bennetzen, RK Dawe, J Jiang, N Jiang, GG Presting, SR Wessler, S Aluru, RA Martienssen, SW Clifton, WR McCombie, RA Wing, RK Wilson « view remaining 107 authors » (2009) The B73 maize genome: complexity, diversity, and dynamics. Science, 326(5956): 1112-1115. (Cover image; a commentary on this manuscript solicited by journal editors and written by C. Feuillet and K. Eversole was provided in 326: 1071-1072; cited in Wikipedia: http://en.wikipedia.org/wiki/Maize; selected as an Editors' Choice by MaizeGDB, 12/09; selected as a "must read" by the Faculty of 1000 Biology)