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Journal Publications (2001 ~ 2005) (Showing 32 out of 154 articles)
Dr. Schnable's Google Scholar Page [ N=14,868 ]

* Authors contributed equally to the article
2005 (13 articles)↑ Top
  • Ashlock DA, RA Swanson-Wagner, PS Schnable (2005) Selection of genetically diverse recombinant inbreds with an ordered gene evolutionary algorithm. CIBCB'05: 237-242.
    [ Abstract | Full Text PDF | doi:10.1109/CIBCB.2005.1594923 ]
  • Hochholdinger F, K Woll, L Guo, PS Schnable (2005) The accumulation of abundant soluble proteins changes early in the development of the primary roots of maize (Zea mays L.). Proteomics, 5(18): 4885-4893. (An image from this manuscript was selected for inclusion on the cover)
    [ Abstract | Full Text PDF | doi:10.1002/pmic.200402034 ]

  • Woll K, LA Borsuk, H Stransky, DS Nettleton, PS Schnable, F Hochholdinger (2005) Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1. Plant Physiol, 139(3): 1255-1267.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1104/pp.105.067330 | Cited 138 times ]
  • Fu Y*, SJ Emrich*, L Guo, TJ Wen, S Aluru, DA Ashlock, PS Schnable (2005) Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes. PNAS, 102(34): 12282-12287.
    [ Abstract | Full Text PDF | doi:10.1073/pnas.0503394102 | Cited 79 times ]
  • Jackson BG, S Aluru, PS Schnable (2005) Consensus genetic maps: a graph theoretic approach. Comput Syst Bioinformatics Conf: 35-43.
    [ Abstract | Full Text PDF | doi:10.1109/CSB.2005.26 ]
  • Wen TJ, F Hochholdinger, M Sauer, W Bruce, PS Schnable (2005) The roothairless1 gene of maize encodes a homolog of sec3, which is involved in polar exocytosis. Plant Physiol, 138(3): 1637-1643. (Epub: 24 Jun 2005; Selected as an Editors' Choice by MaizeGDB, 4/07)
    [ Abstract | Full Text PDF | doi:10.1104/pp.105.062174 | Cited 137 times ]
  • Hsia AP, TJ Wen, HD Chen, Z Liu, MD Yandeau-Nelson, Y Wei, L Guo, PS Schnable (2005) Temperature Gradient Capillary Electrophoresis (TGCE) - A tool for the high throughput discovery and mapping of SNPs and IDPs. Theor Appl Genet, 111(2): 218-225.
    [ Abstract | Full Text PDF | doi:10.1007/s00122-005-1997-5 ]
  • Ding J, K Viswanathan, D Berleant, L Hughes, ES Wurtele, DA Ashlock, JA Dickerson, A Fulmer, PS Schnable (2005) Using the biological taxonomy to access biological literature with PathBinderH. Bioinformatics, 21(10): 2560-2562.
    [ Abstract | Full Text PDF | doi:10.1093/bioinformatics/bti381 ]
  • Dietrich CR, MA Perera, MD Yandeau-Nelson, RB Meeley, BJ Nikolau, PS Schnable (2005) Characterization of two gl8 paralogs reveals that the 3-ketoacyl reductase component of fatty acid elongase is essential for maize (Zea mays L.) development. Plant J, 42(6): 844-861.
    [ Abstract | Full Text PDF | doi:10.1111/j.1365-313X.2005.02418.x | Cited 68 times ]
  • Yao H, PS Schnable (2005) Cis-effects on meiotic recombination across distinct a1-sh2 intervals in a common Zea genetic background. Genetics, 170(4): 1929-1944.
    [ Abstract | Full Text PDF | doi:10.1534/genetics.104.034454 ]
  • Yao H, L Guo, Y Fu, LA Borsuk, TJ Wen, DS Skibbe, X Cui, BE Scheffler, J Cao, SJ Emrich, DA Ashlock, PS Schnable (2005) Evaluation of five ab initio gene prediction programs for the discovery of maize genes. Plant Mol Biol, 57(3): 445-460.
    [ Abstract | Full Text PDF | doi:10.1007/s11103-005-0271-1 ]
  • Yandeau-Nelson MD, Q Zhou, H Yao, X Xu, BJ Nikolau, PS Schnable (2005) MuDR transposase increases the frequency of meiotic crossovers in the vicinity of a Mu insertion in the maize a1 gene. Genetics, 169(2): 917-929.
    [ Abstract | Full Text PDF | doi:10.1534/genetics.104.035089 ]
  • Skibbe DS, PS Schnable (2005) Male sterility in maize. Maydica, 50: 367-376.
2004 (9 articles)↑ Top
  • Hochholdinger F, L Guo, PS Schnable (2004) Lateral roots affect the proteome of the primary root of maize (Zea mays L.). Plant Mol Biol, 56(3): 397-412.
    [ Abstract | Full Text PDF | doi:10.1007/s11103-004-3476-9 | Cited 55 times ]
  • Ashlock DA, SJ Emrich, KM Bryden, SM Corns, TJ Wen, PS Schnable (2004) A comparison of evolved finite state classifiers and interpolated Markov models for Improving PCR primer design. CIBCB'04: 190-197.
    [ Abstract | Full Text PDF | doi:10.1109/CIBCB.2004.1393953 ]
  • Fu Y, AP Hsia, L Guo, PS Schnable (2004) Types and frequencies of sequencing errors in methyl-filtered and high Cot maize genome survey sequences. Plant Physiol, 135(4): 2040-2045.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1104/pp.104.041640 ]
  • Kirch HH, D Bartels, Y Wei, PS Schnable, AJ Wood (2004) The ALDH gene superfamily of Arabidopsis. Trends Plant Sci, 9(8): 371-377.
    [ Abstract | Full Text PDF | doi:10.1016/j.tplants.2004.06.004 | Cited 179 times ]
  • Chou HH, AP Hsia, DL Mooney, PS Schnable (2004) Picky: oligo microarray design for large genomes. Bioinformatics, 20(17): 2893-2902.
    [ Abstract | Full Text PDF | doi:10.1093/bioinformatics/bth347 | Cited 108 times ]
  • da Costa e Silva O, R Lorbiecke, P Garg, L Müller, M Waßmann, P Lauert, MJ Scanlon, AP Hsia, PS Schnable, K Krupinska, U Wienand (2004) The Etched1 gene of Zea mays (L.) encodes a zinc ribbon protein that belongs to the transcriptionally active chromosome (TAC) of plastids and is similar to the transcription factor TFIIS. Plant J, 38(6): 923-939.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1111/j.1365-313X.2004.02094.x ]
  • Hochholdinger F, L Guo, PS Schnable (2004) Cytoplasmic regulation of the accumulation of nuclear-encoded proteins in the mitochondrial proteome of maize. Plant J, 37(2): 199-208.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1046/j.1365-313X.2003.01955.x | Cited 55 times ]
  • Schnable PS, F Hochholdinger, M Nakazono (2004) Global expression profiling applied to plant development. Current Opinion in Plant Biology, 7(1): 50-56.
    [ Abstract | Full Text PDF | doi:10.1016/j.pbi.2003.11.001 | Cited 76 times ]
  • Emrich SJ, S Aluru, Y Fu, TJ Wen, M Narayanan, L Guo, DA Ashlock, PS Schnable (2004) A strategy for assembling the maize (Zea mays L.) genome. Bioinformatics, 20(2): 140-147.
    [ Abstract | Full Text PDF | doi:10.1093/bioinformatics/bth017 | Cited 67 times ]
2003 (3 articles)↑ Top
  • Qiu F, L Guo, TJ Wen, DA Ashlock, PS Schnable (2003) DNA sequence-based "Bar-Codes" for tracking the origins of expressed sequence tags from a maize cDNA library constructed using multiple mRNA sources. Plant Physiol, 133(2): 475-481.
    [ Abstract | Full Text PDF | doi:10.1104/pp.103.025015 ]
  • Nakazono M, F Qiu, LA Borsuk, PS Schnable (2003) Laser-capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: identification of genes expressed differentially in epidermal cells or vascular tissues of maize. Plant Cell, 15(4): 583-596. (Selected as a "must read" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | doi:10.1105/tpc.008102 | Cited 365 times ] Faculty1000 Recommeded Article
  • Cui X, AP Hsia, F Liu, DA Ashlock, RP Wise, PS Schnable (2003) Alternative transcription initiation sites and polyadenylation sites are recruited during Mu suppression at the rf2a locus of maize. Genetics, 163(2): 685-698.
2002 (5 articles)↑ Top
  • Xu X, CR Dietrich, R Lessire, BJ Nikolau, PS Schnable (2002) The endoplasmic reticulum-associated maize GL8 protein is a component of the Acyl-Coenzyme A elongase involved in the production of cuticular waxes. Plant Physiol, 128(3): 924-934.
    [ Abstract | Full Text PDF | doi:10.1104/pp.010621 | Cited 76 times ]
  • Liu F, PS Schnable (2002) Functional specialization of maize mitochondrial aldehyde dehydrogenases. Plant Physiol, 130(4): 1657-1674.
    [ Abstract | Full Text PDF | doi:10.1104/pp.012336 | Cited 81 times ]
  • Dietrich CR, F Cui, ML Packila, J Li, DA Ashlock, BJ Nikolau, PS Schnable (2002) Maize Mu transposons are targeted to the 5' untranslated region of the gl8 gene and sequences flanking Mu target-site duplications exhibit nonrandom nucleotide composition throughout the genome. Genetics, 160(2): 697-716.
  • Yao H, Q Zhou, J Li, H Smith, MD Yandeau-Nelson, BJ Nikolau, PS Schnable (2002) Molecular characterization of meiotic recombination across the 140-kb multigenic a1-sh2 interval of maize. PNAS, 99(9): 6157-6162. (A commentary on this manuscript solicited by journal editors and written by Cliff Weil was provided in 99:5763-5765; selected as a "must read" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | doi:10.1073/pnas.082562199 | Cited 103 times ] Faculty1000 Recommeded Article
  • Skibbe DS, F Liu, TJ Wen, MD Yandeau-Nelson, X Cui, J Cao, CR Simmons, PS Schnable (2002) Characterization of the aldehyde dehydrogenase gene families of Zea mays and Arabidopsis. Plant Mol Biol, 48(5): 751-764.
    [ Abstract | Full Text PDF | doi:10.1023/A:1014870429630 | Cited 74 times ]
2001 (2 articles)↑ Top
  • Bennetzen JL, VL Chandler, PS Schnable (2001) National Science Foundation-sponsored workshop report. Maize genome sequencing project. Plant Physiol, 127: 1572-1578.
    [ Abstract | Full Text PDF | doi:10.1104/pp.010817 | Cited 63 times ]
  • Liu F, X Cui, HT Horner, H Weiner, PS Schnable (2001) Mitochondrial aldehyde dehydrogenase activity is required for male fertility in maize. Plant Cell, 13(5): 1063-1078. (An image from this manuscript was selected for inclusion on the cover)
    [ Abstract | Full Text PDF | doi:10.1105/tpc.13.5.1063 | Cited 203 times ]

Proteomics 2005: Volumne 5, Issue 18


Hochholdinger F, K Woll, L Guo, PS Schnable (2005) The accumulation of abundant soluble proteins changes early in the development of the primary roots of maize (Zea mays L.). Proteomics, 5(18): 4885-4893. (An image from this manuscript was selected for inclusion on the cover)

[ Abstract | Full Text PDF | doi:10.1002/pmic.200402034 ]

Plant Cell 2001: Volumne 13, Issue 5


Liu F, X Cui, HT Horner, H Weiner, PS Schnable (2001) Mitochondrial aldehyde dehydrogenase activity is required for male fertility in maize. Plant Cell, 13(5): 1063-1078. (An image from this manuscript was selected for inclusion on the cover)

[ Abstract | Full Text PDF | doi:10.1105/tpc.13.5.1063 | Cited 203 times ]