Journal Publications
2004
Hochholdinger F, L Guo, PS Schnable (2004) Lateral roots affect the proteome of the primary root of maize (Zea mays L.). Plant Mol Biology, 56: 397-412.
Ashlock DA, SJ Emrich, KM Bryden, SM Corns, TJ Wen, PS Schnable (2004) A Comparison of Evolved Finite State Classifiers and Interpolated Markov Models for Improving PCR Primer Design. 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB '04): 190-197.
Fu Y, AP Hsia, L Guo, PS Schnable (2004) Types and frequencies of sequencing errors in methyl-filtered and high Cot maize genome survey sequences. Plant Physiology, 135: 2040-2045.
Chou HH, AP Hsia, D Mooney, PS Schnable (2004) PICKY: an oligo microarray design tool for large genomes. Bioinformatics, 20: 2893-2902.
Kirch HH, D Bartels, Y Wei, PS Schnable, AJ Wood (2004) The ALDH gene superfamily of Arabidopsis. Trends in Plant Science, 9: 371-377.
da Costa é Silva O, R Lorbiecke, P Garg, L Müller, M Waßmann, P Lauert, M Scanlon, AP Hsia, PS Schnable, K Krupinska, U Wienand (2004) The Etched1 gene of Zea mays (L.) encodes a zinc ribbon protein that belongs to the transcriptionally active chromosome (TAC) of plastids and is similar to the transcription factor TFIIS. Plant Journal, 38(6): 923-939.
Emrich SJ, S Aluru, Y Fu, TJ Wen, M Narayanan, L Guo, DA Ashlock, PS Schnable (2004) A strategy for assembling the maize (Zea mays L.) genome. Bioinformatics, 20: 140-147.
Schnable PS, M Nakazono, F Hochholdinger (2004) Global Expression Profiling Applied to Plant Development. Current Opinion in Plant Biology, 7: 50-56.
Hochholdinger F, L Guo, PS Schnable (2004) Cytoplasmic regulation of the accumulation of nuclear-encoded proteins in the mitochondrial proteome of maize. Plant Journal, 37(2): 199-208.
2003
Qiu F, L Guo, TJ Wen, DA Ashlock, PS Schnable (2003) DNA sequence-based "bar-codes" for tracking the origins of ESTs from a maize cDNA library constructed using multiple mRNA sources. Plant Physiology, 133: 475-481.
Nakazono M, F Qiu, LA Borsuk, PS Schnable (2003) Laser capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: Identification of genes differentially expressed in epidermal cells or vascular tissues of maize. Plant Cell, 15: 583-596. (Selected as one of the papers by Faculty 1000 in 2008)
Cui XQ, AP Hsia, F Liu, D Ashlock, RP Wise, PS Schnable (2003) Alternative transcription initiation sites and polyadenylation sites are recruited during Mu suppression at the rf2a locus of maize. Genetics, 163: 685-698.
2002
Liu F, PS Schnable (2002) Functional specialization of maize mitochondrial aldehyde dehydrogenases. Plant Physiology, 130: 1657-1674.
Skibbe DS, F Liu, TJ Wen, MD Yandeau, XQ Cui, J Cao, CR Simmons, PS Schnable (2002) Characterization of the aldehyde dehydrogenase gene families of Zea mays and Arabidopsis. Plant Molecular Biology, 48: 751-764.
Yao H, Q Zhou, J Li, H Smith, MD Yandeau, B Nikolau, PS Schnable (2002) Meiotic recombination across the 140-kb multigenic maize a1-sh2 interval. Proc Natl Acad Sci, 99: 6157-6162. (A commentary on this manuscript solicited by the editors of PNAS and written by Cliff Weil was provided in 99:5763-5765. Selected as one of the papers by Faculty 1000 in 2008)
Xu X, CR Dietrich, R Lessire, BJ Nikolau, PS Schnable (2002) The endoplasmic reticulum-associated maize GL8 protein is one of the components of the acyl-CoA elongase complex involved in the production of cuticular waxes. Plant Physiology, 128: 924-934.
Dietrich CR, F Cui, ML Packila, J Li, DA Ashlock, BJ Nikolau, PS Schnable (2002) Maize Mu Transposons Are Targeted to the 5' Untranslated Region of the gl8 Gene and Sequences Flanking Mu Target-Site Duplications Exhibit Nonrandom Nucleotide Composition Throughout the Genome. Genetics, 160: 697-716.
2001
Liu F, XQ Cui, HT Horner, H Weiner, PS Schnable (2001) Mitochondrial aldehyde dehydrogenase activity is required for male fertility in maize (Zea mays L.). Plant Cell, 13: 1063-1078. (image from this manuscript selected for the cover of the May issue)