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Journal Publications (2011 ~ 2017) (Showing 43 out of 154 articles)
Dr. Schnable's Google Scholar Page [ N=14,884 ]

* Authors contributed equally to the article
2017 (1 article)↑ Top
  • Ye H, S Liu, B Tang, J Chen, Z Xie, TM Nolan, H Jiang, H Guo, HY Lin, L Li, Y Wang, H Tong, M Zhang, C Chu, Z Li, M Aluru, S Aluru, PS Schnable, Y Yin (2017) RD26 mediates crosstalk between drought and brassinosteriod signaling pathways. Nat. Commun., 8: 14573.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1038/ncomms14573 ]
2016 (4 articles)↑ Top
  • Li L, R Briskine, R Schaefer, PS Schnable, CL Myers, B Tang, NM Springer, GJ Muehlbauer (2016) Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias. BMC Genomics, 17: 875. (Epub 2016 Nov 4)
    [ Abstract | Full Text PDF | doi:10.1186/s12864-016-3194-0 ]
  • Li L*, S Hey*, S Liu, Q Liu, C McNinch, HC Hu, TJ Wen, C Marcon, A Paschold, W Bruce, PS Schnable, F Hochholdinger (2016) Characterization of maize roothairless6 which encodes a D-type cellulose synthase and controls the switch from bulge formation to tip growth. Sci. Rep., 6: 34395.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1038/srep34395 ]
  • Yu X, X Li, T Guo, C Zhu, Y Wu, SE Mitchell, KL Roozeboom, D Wang, ML Wang, GA Pederson, TT Tesso, PS Schnable, R Bernardo, J Yu (2016) Genomic prediction contributing to a promising global strategy to turbocharge gene banks. Nat. Plants, 2: 16150. (Epub 2016 Oct 3)
    [ Abstract | Full Text PDF (External) | Supplemental Materials | doi:10.1038/nplants.2016.150 ]
  • Yáñez JM, S Naswa, ME López, L Bassini, K Correa, J Gilbey, L Bernatchez, A Norris, R Neira, JP Lhorente, PS Schnable, S Newman, A Mileham, N Deeb, A Di Genova, A Maass (2016) Genome-wide single nucleotide polymorphism (SNP) discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations. Mol Ecol Resour, 16(4): 1002-1011.
    [ Abstract | Full Text PDF | doi:10.1111/1755-0998.12503 ]
2015 (6 articles)↑ Top
  • Leiboff S, X Li, HC Hu, N Todt, J Yang, x Li, X Yu, GJ Muehlbauer, MCP Timmermans, J Yu, PS Schnable, MJ Scanlon (2015) Genetic control of morphometric diversity in the maize shoot apical meristem. Nat. Commun., 6: 8974. (Epub 2015 Nov 20)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1038/ncomms9974 ]
  • Yang J, H Jiang, CT Yeh, J Yu, JA Jeddeloh, DS Nettleton, PS Schnable (2015) Extreme Phenotype-Genome-Wide Association Study (XP-GWAS): a method for identifying trait-associated variants by sequencing pools of individuals selected from a diversity panel. Plant J, 84: 587-596.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1111/tpj.13029 ]
  • Mester DI, YI Ronin, PS Schnable, S Aluru, AB Korol (2015) Fast and accurate construction of ultra-dense consensus genetic maps using evolution strategy optimization. PLoS ONE, 10(4): e0122485.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pone.0122485 ]
  • Thompson AM, J Yu, MCP Timmermans, PS Schnable, JC Crants, MJ Scanlon, GJ Muehlbauer (2015) Diversity of maize shoot apical meristem architecture and its relationship to plant morphology. G3, 5(5): 819-827. (Early Online March 5, 2015)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1534/g3.115.017541 ]
  • Tang H, X Zhang, C Miao, J Zhang, R Ming, JC Schnable, PS Schnable, E Lyons, J Lu (2015) ALLMAPS: robust scaffold ordering based on multiple maps. Genome Biol, 16(3).
    [ Abstract | Full Text PDF | doi:10.1186/s13059-014-0573-1 ]
  • Li L*, S Hill-Skinner*, S Liu, D Beuchle, HM Tang, CT Yeh, DS Nettleton, PS Schnable (2015) The maize brown midrib4 (bm4) gene encodes a functional folylpolyglutamate synthase. Plant J, 81: 493-504.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1111/tpj.12745 ]
2014 (8 articles)↑ Top
  • Paschold A, NB Larson, C Marcon, JC Schnable, CT Yeh, C Lanz, DS Nettleton, HP Piepho, PS Schnable, F Hochholdinger (2014) Nonsyntenic genes drive highly dynamic complementation of gene expression in maize hybrids. Plant Cell, 26: 3939-3948.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1105/tpc.114.130948 ]
  • Zhang Y, A Paschold, C Marcon, S Liu, H Tai, J Nestler, CT Yeh, N Opitz, C Lanz, PS Schnable, F Hochholdinger (2014) The Aux/IAA gene rum1 involved in seminal and lateral root formation controls vascular patterning in maize (Zea mays L.) primary roots. J Exp Bot, 65(17): 4919-4930.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1093/jxb/eru249 ]
  • Nestler J, S Liu, TJ Wen, A Paschold, C Marcon, HM Tang, D Li, L Li, RB Meeley, H Sakai, W Bruce, PS Schnable, F Hochholdinger (2014) Roothairless5, which functions in maize (Zea mays L.) root hair initiation and elongation encodes a monocot-specific NADPH oxidase. Plant J, 79(5): 729-740.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1111/tpj.12578 ]
  • Thompson AM, JC Crants, PS Schnable, J Yu, MCP Timmermans, NM Springer, MJ Scanlon, GJ Muehlbauer (2014) Genetic control of maize shoot apical meristem architecture. G3, 4(7): 1327-1337.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1534/g3.114.011940 ]
  • Wang X, J Chen, Z Xie, S Liu, TM Nolan, H Ye, M Zhang, H Guo, PS Schnable, Z Li, Y Yin (2014) Histone lysine methyltransferase SDG8 is involved in brassinosteroid-regulated gene expression in Arabidopsis thaliana. Mol Plant, 7(8): 1303-1315.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1093/mp/ssu056 ]
  • Li L, SR Eichten, R Shimizu, KA Petsch, CT Yeh, W Wu, AM Chettoor, SA Givan, RA Cole, JE Fowler, MMS Evans, MJ Scanlon, J Yu, PS Schnable, MCP Timmermans, NM Springer, GJ Muehlbauer (2014) Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biol, 15(2): R40.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1186/gb-2014-15-2-r40 | Cited 92 times ]
  • Cai W, C Wang, Y Li, C Yao, L Shen, S Liu, X Bao, PS Schnable, J Girton, J Johansen, KM Johansen (2014) Genome-wide analysis of regulation of gene expression and H3K9me2 distribution by JIL-1 kinase mediated histone H3S10 phosphorylation in Drosophila. Nucleic Acids Res, 42(9): 5456-5467. (Epub 2014 Mar 5)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1093/nar/gku173 ]
  • Tang HM, S Liu, S Hill-Skinner, W Wu, D Reed, CT Yeh, DS Nettleton, PS Schnable (2014) The maize brown midrib2 (bm2) gene encodes a methylenetetrahydrofolate reductase that contributes to lignin accumulation. Plant J, 77(3): 380-392.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1111/tpj.12394 ]
2013 (6 articles)↑ Top
  • Li L, D Li, S Liu, X Ma, CR Dietrich, HC Hu, G Zhang, Z Liu, J Zheng, G Wang, PS Schnable (2013) The maize glossy13 gene, cloned via BSR-Seq and Seq-Walking encodes a putative ABC transporter required for the normal accumulation of epicuticular waxes. PLoS ONE, 8(12): e82333.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pone.0082333 ]
  • Soltis DE, MA Gitzendanner, G Stull, M Chester, A Chanderbali, S Chamala, IE Jordon-Thaden, PS Soltis, PS Schnable, WB Barbazuk (2013) The potential of genomics in plant systematics. taxon, 62(2): 886-898.
    [ Abstract | Full Text PDF | doi:10.12705/625.13 ]
  • Liu S, AP Hsia, PS Schnable (2013) Digestion-ligation-amplification (DLA): a simple genome walking method to amplify unknown sequences flanking mutator (Mu) transposons and thereby facilitate gene cloning. Methods Mol Biol, 1057: 167-176.
    [ Abstract | Full Text PDF | doi:10.1007/978-1-62703-568-2_12 ]
  • Muthreich N, C Majer, M Beatty, A Paschold, A Schützenmeister, Y Fu, WA Malik, PS Schnable, HP Piepho, H Sakai, F Hochholdinger (2013) Comparative transcriptome profiling of maize coleoptilar nodes during shoot-borne root initiation. Plant Physiol, 163(1): 419-430.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1104/pp.113.221481 ]
  • Schnable PS, NM Springer (2013) Progress toward understanding heterosis in crop plants. Annu Rev Plant Biol, 64: 71-88.
    [ Abstract | Full Text PDF (External) | doi:10.1146/annurev-arplant-042110-103827 | Cited 112 times ]
  • Li L, KA Petsch, R Shimizu, S Liu, WW Xu, K Ying, J Yu, MJ Scanlon, PS Schnable, MCP Timmermans, NM Springer, GJ Muehlbauer (2013) Mendelian and non-mendelian regulation of gene expression in maize. PLoS Genetics, 9(1): e1003202. (Epub: 2013 Jan 17; Selected as an Editors' Choice by MaizeGDB, 02/13; "Recommended" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | Supplemental Materials | doi: 10.1371/journal.pgen.1003202 ] Faculty1000 Recommeded Article
2012 (11 articles)↑ Top
  • Eichten SR, NA Ellis, I Makarevitch, CT Yeh, JI Gent, L Guo, KM McGinnis, X Zhang, PS Schnable, MW Vaughn, RK Dawe, NM Springer (2012) Spreading of heterochromatin is limited to specific families of maize retrotransposons. PLoS Genetics, 8(12): e1003127. ("Recommended" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1003127 | Cited 58 times ] Faculty1000 Recommeded Article
  • Paschold A, Y Jia, C Marcon, S Lund, NB Larson, CT Yeh, S Ossowski, C Lanz, DS Nettleton, PS Schnable, F Hochholdinger (2012) Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents. Genome Res, 22(12): 2445-2454.
  • Liu S, K Ying, CT Yeh, J Yang, RA Swanson-Wagner, W Wu, T Richmond, DJ Gerhardt, J Lai, NM Springer, DS Nettleton, JA Jeddeloh, PS Schnable (2012) Changes in genome content generated via segregation of non-allelic homologs. Plant J, 72(3): 390-399. ("Recommended" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1111/j.1365-313X.2012.05087.x ] Faculty1000 Recommeded Article
  • Takacs EM, J Li, C Du, L Ponnala, D Janick-Buckner, J Yu, GJ Muehlbauer, PS Schnable, MCP Timmermans, Q Sun, DS Nettleton, MJ Scanlon (2012) Ontogeny of the maize shoot apical meristem. Plant Cell, 24(8): 3219-3234. (Selected as an Editors’ Choice by MaizeGDB, 10/12; Selected by journal editors for "in brief" highlight; "Recommended" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1105/tpc.112.099614 ] Faculty1000 Recommeded Article
  • Li X, C Zhu, CT Yeh, W Wu, EM Takacs, KA Petsch, F Tian, G Bai, ES Buckler, GJ Muehlbauer, MCP Timmermans, MJ Scanlon, PS Schnable, J Yu (2012) Genic and nongenic contributions to natural variation of quantitative traits in maize. Genome Res, 22(12): 2436-2444. (Selected as an Editors' Choice by MaizeGDB, 8/12)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1101/gr.140277.112 | Cited 53 times ]
  • Zhang X, RN Douglas, J Strable, M Lee, B Buckner, D Janick-Buckner, PS Schnable, MCP Timmermans, MJ Scanlon (2012) PUNCTATE VASCULAR EXPRESSION1 is a novel maize gene required for leaf pattern formation that functions downstream of the trans-acting small interfering RNA pathway. Plant Physiol, 159(4): 1453-1462. (Selected as an Editors’ Choice by MaizeGDB, 7/12)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1104/pp.111.192419 ]
  • Lin Z, X Li, LM Shannon, CT Yeh, ML Wang, G Bai, Z Peng, J Li, HN Trick, TE Clemente, J Doebley, PS Schnable, MR Tuinstra, TT Tesso, F White, J Yu (2012) Parallel domestication of the Shattering1 genes in cereals. Nat Genet, 44(6): 720-724. (Epub: 13 May 2012; Selected as an Editors' Choice by MaizeGDB, 7/12; "Recommended" by the Faculty of 1000 Biology)
  • Liu S, CT Yeh, HM Tang, DS Nettleton, PS Schnable (2012) Gene mapping via Bulked Segregant RNA-Seq (BSR-Seq). PLoS ONE, 7(5): e36406. (Selected as an Editors' Choice by MaizeGDB, 6/12)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pone.0036406 | Cited 69 times ]
  • Ronin YI, DI Mester, D Minkov, R Belotserkovski, BG Jackson, PS Schnable, S Aluru, AB Korol (2012) Two-phase analysis in consensus genetic mapping. G3, 2(5): 537-549.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1534/g3.112.002428 ]
  • Buggs RJA, S Chamala, W Wu, JA Tate, PS Schnable, DE Soltis, PS Soltis, WB Barbazuk (2012) Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin. Curr Biol, 22(3): 248-252.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1016/j.cub.2011.12.027 | Cited 86 times ]

  • Buggs RJA, S Renny-Byfield, M Chester, IE Jordon-Thaden, LF Viccini, S Chamala, AR Leitch, PS Schnable, WB Barbazuk, PS Soltis, DE Soltis (2012) Next-generation sequencing and genome evolution in allopolyploids . Am J Bot, 99(2): 372-382.
    [ Abstract | Full Text PDF | doi:10.3732/ajb.1100395 ]
2011 (7 articles)↑ Top
  • Waters AJ, I Makarevitch, SR Eichten, RA Swanson-Wagner, CT Yeh, WW Xu, PS Schnable, MW Vaughn, M Gehring, NM Springer (2011) Parent-of-origin effects on gene expression and DNA methylation in the Maize endosperm. Plant Cell, 23(12): 4221-4233.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1105/tpc.111.092668 | Cited 104 times ]
  • Eichten SR, RA Swanson-Wagner, JC Schnable, AJ Waters, PJ Hermanson, S Liu, CT Yeh, Y Jia, K Gendler, M Freeling, PS Schnable, MW Vaughn, NM Springer (2011) Heritable epigenetic variation among maize inbreds. PLoS Genetics, 7(11): e1002372. (Selected as an Editors' Choice by MaizeGDB, 1/12; "Recommended" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1002372 | Cited 93 times ] Faculty1000 Recommeded Article
  • Eichten SR, JM Foerster, N de Leon, K Ying, CT Yeh, S Liu, JA Jeddeloh, PS Schnable, SM Kaeppler, NM Springer (2011) B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize. Plant Physiol, 156(4): 1679-1690. (Selected as an Editors' Choice by MaizeGDB, 9/11)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1104/pp.111.174748 ]
  • Koesterke L, D Stanzione, MW Vaughn, SM Welch, W Kusnierczyk, J Yang, CT Yeh, DS Nettleton, PS Schnable (2011) An efficient and scalable implementation of SNP-Pair interaction testing for genetic association studies. Parallel and Distributed Processing Workshops and Phd Forum (IPDPSW): 523-530. (2011 IEEE International Symposium)
    [ Abstract | Full Text PDF | doi:10.1109/IPDPS.2011.190 ]
  • Buggs RJA, L Zhang, N Miles, JA Tate, L Gao, W Wu, PS Schnable, WB Barbazuk, PS Soltis, DE Soltis (2011) Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant. Curr Biol, 21(7): 551-556.
    [ Abstract | Full Text PDF | doi:10.1016/j.cub.2011.02.016 | Cited 99 times ]
  • Barbazuk WB, PS Schnable (2011) SNP discovery by transcriptome pyrosequencing. Methods Mol Biol, 729: 225-246.
    [ Abstract | Full Text PDF | doi:10.1007/978-1-61779-065-2_15 ]
  • Feuillet C, JE Leach, J Rogers, PS Schnable, K Eversole (2011) Crop genome sequencing: lessons and rationales. Trends Plant Sci, 16(2): 77-88.
    [ Abstract | Full Text PDF | doi:10.1016/j.tplants.2010.10.005 ]

Current Biology 2012: Volumne 22, Issue 3


Buggs RJA, S Chamala, W Wu, JA Tate, PS Schnable, DE Soltis, PS Soltis, WB Barbazuk (2012) Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin. Curr Biol, 22(3): 248-252.

[ Abstract | Full Text PDF | Supplemental Materials | doi:10.1016/j.cub.2011.12.027 | Cited 86 times ]