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Journal Publications (2009 ~ 2013) (Showing 42 out of 131 articles)
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2013 (2 articles)↑ Top
  • Schnable PS, NM Springer (2013) Progress toward understanding heterosis in crop plants. Annu. Rev. Plant Biol., 64: 71-88.
    [ Abstract | Full Text PDF | doi:10.1146/annurev-arplant-042110-103827 ]
  • Li L, KA Petsch, R Shimizu, S Liu, WW Xu, K Ying, J Yu, MJ Scanlon, PS Schnable, MCP Timmermans, NM Springer, GJ Muehlbauer (2013) Mendelian and non-mendelian regulation of gene expression in maize. PLoS Genetics, 9(1): e1003202. (Epub: 2013 Jan 17; Selected as an Editors' Choice by MaizeGDB, 02/13)
    [ Abstract | Full Text PDF | Supplemental Materials | doi: 10.1371/journal.pgen.1003202 ]
2012 (11 articles)↑ Top
  • Eichten SR, NA Ellis, I Makarevitch, CT Yeh, JI Gent, G Lin, KM McGinnis, X Zhang, PS Schnable, MW Vaughn, RK Dawe, NM Springer (2012) Spreading of heterochromatin is limited to specific families of maize retrotransposons. PLoS Genetics, 8(12): e1003127.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1003127 ]
  • Paschold A, Y Jia, C Marcon, S Lund, NB Larson, CT Yeh, S Ossowski, C Lanz, DS Nettleton, PS Schnable, F Hochholdinger (2012) Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents. Genome Res, 22(12): 2445-2454.
    [ Abstract | Full Text PDF | Supplemental Materials | Press Release | doi:10.1101/gr.138461.112 ]
  • Liu S, K Ying, CT Yeh, J Yang, RA Swanson-Wagner, W Wu, T Richmond, DJ Gerhardt, J Lai, NM Springer, DS Nettleton, JA Jeddeloh, PS Schnable (2012) Changes in genome content generated via segregation of non-allelic homologs. Plant J, 72(3): 390-399. ("Recommended" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1111/j.1365-313X.2012.05087.x ] Faculty1000 Recommeded Article
  • Takacs EM, J Li, C Du, L Ponnala, D Janick-Buckner, J Yu, GJ Muehlbauer, PS Schnable, MCP Timmermans, Q Sun, DS Nettleton, MJ Scanlon (2012) Ontogeny of the maize shoot apical meristem. Plant Cell, 24(8): 3219-3234. (Selected as an Editors’ Choice by MaizeGDB, 10/12; Selected by journal editors for "in brief" highlight; "Recommended" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1105/tpc.112.099614 ] Faculty1000 Recommeded Article
  • Li X, C Zhu, CT Yeh, W Wu, EM Takacs, KA Petsch, F Tian, G Bai, ES Buckler, GJ Muehlbauer, MCP Timmermans, MJ Scanlon, PS Schnable, J Yu (2012) Genic and non-genic contributions to natural variation of quantitative traits in maize. Genome Res, 22(12): 2436-2444. (Selected as an Editors’ Choice by MaizeGDB, 8/12)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1101/gr.140277.112 ]
  • Zhang X, RN Douglas, J Strable, M Lee, B Buckner, D Janick-Buckner, PS Schnable, MCP Timmermans, MJ Scanlon (2012) PUNCTATE VASCULAR EXPRESSION1 (PVE1) is a novel maize gene required for leaf pattern formation that functions downstream of the ta-siARF pathway. Plant Physiol, 159(4): 1453-1462. (Selected as an Editors’ Choice by MaizeGDB, 7/12)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1104/pp.111.192419 ]
  • Lin Z, X Li, LM Shannon, CT Yeh, ML Wang, G Bai, Z Peng, J Li, HN Trick, CE Thomas, J Doebley, PS Schnable, MR Tuinstra, TT Tesso, F White, J Yu (2012) Parallel domestication of the Shattering1 genes in cereals. Nat Genet, 44(6): 720-724. (Epub: 13 May 2012; Selected as an Editors’ Choice by MaizeGDB, 7/12; "Recommended" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1038/ng.2281 ] Faculty1000 Recommeded Article
  • Liu S, CT Yeh, HM Tang, DS Nettleton, PS Schnable (2012) Gene mapping via Bulked Segregant RNA-Seq (BSR-Seq). PLoS ONE, 7(5): e36406. (Selected as an Editors’ Choice by MaizeGDB, 6/12)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pone.0036406 ]
  • Ronin YI, DI Mester, D Minkov, R Belotserkovski, BG Jackson, PS Schnable, S Aluru, AB Korol (2012) Two-phase analysis in consensus genetic mapping. G3, 2(5): 537-549.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1534/g3.112.002428 ]
  • Buggs RJA, S Chamala, W Wu, JA Tate, PS Schnable, DE Soltis, PS Soltis, WB Barbazuk (2012) Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin. Curr Biol, 22(3): 248-252.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1016/j.cub.2011.12.027 ]

  • Buggs RJA, S Renny-Byfield, M Chester, IE Jordon-Thaden, LF Viccini, S Chamala, AR Leitch, PS Schnable, WB Barbazuk, PS Soltis, DE Soltis (2012) Next-generation sequencing and genome evolution in allopolyploids . Am J Bot, 99(2): 372-382.
    [ Abstract | Full Text PDF | doi:10.3732/ajb.1100395 ]
2011 (6 articles)↑ Top
  • Waters AJ, I Makarevitch, SR Eichten, RA Swanson-Wagner, CT Yeh, WW Xu, PS Schnable, MW Vaughn, M Gehring, NM Springer (2011) Parent-of-origin effects on gene expression and DNA methylation in the Maize endosperm. Plant Cell, 23(12): 4221-4233.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1105/tpc.111.092668 ]
  • Eichten SR, RA Swanson-Wagner, J Schnable, AJ Waters, PJ Hermanson, S Liu, CT Yeh, Y Jia, K Gendler, M Freeling, PS Schnable, MW Vaughn, NM Springer (2011) Heritable epigenetic variation among maize inbreds. PLoS Genetics, 7(11): e1002372. (Selected as an Editors’ Choice by MaizeGDB, 1/12; "Recommended" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1002372 ] Faculty1000 Recommeded Article
  • Eichten SR, JM Foerster, N de Leon, K Ying, CT Yeh, S Liu, JA Jeddeloh, PS Schnable, SM Kaoppler, NM Springer (2011) B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize. Plant Physiol, 156(4): 1679-1690. (Selected as an Editors’ Choice by MaizeGDB, 9/11)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1104/pp.111.174748 ]
  • Koesterke L, D Stanzione, MW Vaughn, SM Welch, W Kusnierczyk, J Yang, CT Yeh, DS Nettleton, PS Schnable (2011) An efficient and scalable implementation of SNP-Pair interaction testing for genetic association studies. Parallel and Distributed Processing Workshops and Phd Forum (IPDPSW): 523-530. (2011 IEEE International Symposium)
    [ Abstract | Full Text PDF | doi:10.1109/IPDPS.2011.190 ]
  • Buggs RJA, L Zhang, N Miles, JA Tate, L Gao, W Wu, PS Schnable, WB Barbazuk, PS Soltis, DE Soltis (2011) Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant. Curr Biol, 21(7): 551-556.
    [ Abstract | Full Text PDF | doi:10.1016/j.cub.2011.02.016 ]
  • Barbazuk WB, PS Schnable (2011) SNP discovery by transcriptome pyrosequencing. Methods Mol Biol, 729: 225-246.
    [ Abstract | Full Text PDF | doi:10.1007/978-1-61779-065-2_15 ]
2010 (7 articles)↑ Top
  • Fu Y*, NM Springer*, K Ying*, CT Yeh, AL Iniguez, T Richmond, W Wu, WB Barbazuk, DS Nettleton, JA Jeddeloh, PS Schnable (2010) High-resolution genotyping via whole genome hybridizations to microarrays containing long oligonucleotide probes. PLoS ONE, 5(12): e14178.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pone.0014178 ]
  • Feuillet C, JE Leach, J Rogers, PS Schnable, K Eversole (2010) Crop genome sequencing: lessons and rationales. Trends Plant Sci, 16(2): 77-88.
    [ Abstract | Full Text PDF | doi:10.1016/j.tplants.2010.10.005 ]
  • Lai J*, R Li*, X Xu*, W Jin*, M Xu*, H Zhao, Z Xiang, W Song, K Ying, M Zhang, Y Jiao, P Ni, J Zhang, D Li, X Guo, K Ye, M Jian, B Wang, H Zheng, H Liang, X Zhang, S Wang, S Chen, J Li, Y Fu, NM Springer, H Yang, J Wang, J Dai, PS Schnable, J Wang (2010) Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet, 42(11): 1027-1030. (Cover image; "Recommended" by the Faculty of 1000 Biology)

  • The International Brachypodium Initiative: Principal investigators: JP Vogel, DF Garvin, TC Mockler, J Schmutz, D Rokhsar, MW Bevan ; DNA sequencing and assembly: K Barry, S Lucas, M Harmon-Smith, K Lail, H Tice, J Schmutz (Leader), J Grimwood, N McKenzie, MW Bevan ; Pseudomolecule assembly and BAC end sequencing: N Huo, YQ Gu, GR Lazo, OD Anderson, JP Vogel (Leader), FM You, MC Luo, J Dvorak, J Wright, M Febrer, MW Bevan, D Idziak, R Hasterok, DF Garvin ; Transcriptome sequencing and analysis: E Lindquist, M Wang, SE Fox, HD Priest, SA Filichkin, SA Givan, DW Bryant, JH Chang, TC Mockler (Leader), H Wu, W Wu, AP Hsia, PS Schnable, A Kalyanaraman, WB Barbazuk, TP Michael, SP Hazen, JN Bragg, D Laudencia-Chingcuanco, JP Vogel, DF Garvin, Y Weng, N McKenzie, MW Bevan ; Gene analysis and annotation: G Haberer, M Spannagl, K Mayer (Leader), T Rattei, T Mitros, D Rokhsar, SJ Lee, JKC Rose, LA Mueller, TL York ; Repeats analysis: T Wicker (Leader), JP Buchmann, J Tanskanen, AH Schulman (Leader), H Gundlach, J Wright, MW Bevan, A Costa de Oliveira, L da C. Maia, W Belknap, YQ Gu, N Jiang, J Lai, L Zhu, J Ma, C Sun, E Pritham ; Comparative genomics: J Salse (Leader), F Murat, M Abrouk, G Haberer, M Spannagl, K Mayer, R Bruggmann, J Messing, FM You, MC Luo, J Dvorak ; Small RNA analysis: N Fahlgren, SE Fox, CM Sullivan, TC Mockler, JC Carrington, EJ Chapman, GD May, J Zhai, M Ganssmann, S Gurazada, M German, BC Meyers, PJ Green (Leader) ; Manual annotation and gene family analysis: JN Bragg, L Tyler, J Wu, YQ Gu, GR Lazo, D Laudencia-Chingcuanco, J Thomson, JP Vogel (Leader), SP Hazen, S Chen, HV Scheller, J Harholt, P Ulvskov, SE Fox, SA Filichkin, N Fahlgren, JA Kimbrel, JH Chang, CM Sullivan, EJ Chapman, JC Carrington, TC Mockler, LE Bartley, P Cao, KH Jung, MK Sharma, M Vega-Sanchez, P Ronald, CD Dardick, S Bodt, W Verelst, D Inze, M Heese, A Schnittger, X Yang, UC Kalluri, GA Tuskan, Z Hua, RD Vierstra, DF Garvin, Y Cui, S Ouyang, Q Sun, Z Liu, A Yilmaz, E Grotewold, R Sibout, K Hematy, G Mouille, H Höfte, TP Michael, J Pelloux, D O'Connor, J Schnable, S Rowe, F Harmon, CL Cass, JC Sedbrook, ME Byrne, S Walsh, J Higgins, MW Bevan, P Li, TP Brutnell, T Unver, H Budak, H Belcram, M Charles, B Chalhoub, I Baxter « show all participants » (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature, 463(7282): 763-768.
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1038/nature08747 | Cited 396 times ]
  • Fu Y, NM Springer, DJ Gerhardt, K Ying, CT Yeh, W Wu, RA Swanson-Wagner, M D'Ascenzo, T Millard, L Freeberg, N Aoyama, J Kitzman, D Burgess, T Richmond, T Albert, WB Barbazuk, JA Jeddeloh, PS Schnable (2010) Repeat subtraction-mediated sequence capture from a complex genome. Plant J, 62(5): 898-909. (Epub: 4 Mar 2010; Cover image; Selected by journal editors as a "Featured Article"; Selected as an Editors’ Choice by MaizeGDB, 9/10)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1111/j.1365-313X.2010.04196.x ]

  • Liu S, HD Chen, I Makarevitch, R Shirmer, SJ Emrich, CR Dietrich, WB Barbazuk, NM Springer, PS Schnable (2010) High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing. Genetics, 184: 19-26. (Selected as an Editors’ Choice by MaizeGDB, 4/10)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1534/genetics.109.107557 ]
  • Buggs RJA, S Chamala, W Wu, L Gao, GD May, PS Schnable, DE Soltis, PS Soltis, WB Barbazuk (2010) Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Molecular Ecology, 19(s1): 132-146.
    [ Abstract | Full Text PDF | doi:10.1111/j.1365-294X.2009.04469.x | Cited 58 times ]
2009 (16 articles)↑ Top
  • Liu S, CR Dietrich, PS Schnable (2009) DLA-based strategies for cloning insertion mutants: cloning the gl4 locus of maize using Mu transposon tagged alleles. Genetics, 183: 1215-1225. (Selected as an Editors' Choice by MaizeGDB, 11/09)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1534/genetics.109.108936 ]
  • Schnable PS*, D Ware*, RS Fulton, JC Stein, F Wei, S Pasternak, C Liang, J Zhang, L Fulton, TA Graves, P Minx, AD Reily, L Courtney, SS Kruchowski, C Tomlinson, C Strong, K Delehaunty, C Fronick, W Courtney, SM Rock, E Belter, F Du, K Kim, RM Abbott, M Cotton, A Levy, P Marchetto, K Ochoa, SM Jackson, B Gillam, W Chen, L Yan, J Higginbotham, M Cardenas, J Waligorski, E Applebaum, L Phelps, J Falcone, K Kanchi, T Thane, A Scimone, N Thane, J Henke, T Wang, J Ruppert, N Shah, K Rotter, J Hodges, E Ingenthron, M Cordes, S Kohlberg, J Sgro, B Delgado, K Mead, A Chinwalla, S Leonard, K Crouse, K Collura, D Kudrna, J Currie, R He, A Angelova, S Rajasekar, T Mueller, R Lomeli, G Scara, A Ko, K Delaney, M Wissotski, G Lopez, D Campos, M Braidotti, E Ashley, W Golser, H Kim, S Lee, J Lin, Z Dujmic, W Kim, J Talag, A Zuccolo, C Fan, A Sebastian, M Kramer, L Spiegel, L Nascimento, T Zutavern, B Miller, C Ambroise, S Muller, W Spooner, A Narechania, L Ren, S Wei, S Kumari, BP Faga, M Levy, L McMahan, PV Buren, MW Vaughn, K Ying, CT Yeh, SJ Emrich, Y Jia, A Kalyanaraman, AP Hsia, WB Barbazuk, RS Baucom, TP Brutnell, NC Carpita, C Chaparro, JM Chia, JM Deragon, JC Estill, Y Fu, JA Jeddeloh, Y Han, H Lee, P Li, DR Lisch, S Liu, Z Liu, DH Nagel, MC McCann, P SanMiguel, AM Myers, DS Nettleton, J Nguyen, BW Penning, L Ponnala, KL Schneider, DC Schwartz, A Sharma, C Soderlund, NM Springer, Q Sun, H Wang, M Waterman, R Westerman, TK Wolfgruber, L Yang, Y Yu, L Zhang, S Zhou, Q Zhu, JL Bennetzen, RK Dawe, J Jiang, N Jiang, GG Presting, SR Wessler, S Aluru, RA Martienssen, SW Clifton, WR McCombie, RA Wing, RK Wilson « view remaining 107 authors » (2009) The B73 maize genome: complexity, diversity and dynamics. Science, 326(5956): 1112-1115. (Cover image; a commentary on this manuscript solicited by journal editors and written by C. Feuillet and K. Eversole was provided in 326: 1071-1072; cited in Wikipedia: http://en.wikipedia.org/wiki/Maize; selected as an Editors' Choice by MaizeGDB, 12/09; selected as a "must read" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1126/science.1178534 | Cited 824 times ] Faculty1000 Recommeded Article

  • Jia Y, DR Lisch, K Ohtsu, MJ Scanlon, DS Nettleton, PS Schnable (2009) Loss of RNA-dependent RNA Polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes and 24-nt small RNAs. PLoS Genetics, 5(11): e1000737. (Selected as an Editors' Choice by MaizeGDB, 12/09)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000737 ]
  • Wei F, JC Stein, C Liang, J Zhang, RS Fulton, RS Baucom, E De Paoli, S Zhou, L Yang, Y Han, S Pasternak, A Narechania, L Zhang, CT Yeh, K Ying, DH Nagel, K Collura, D Kudrna, J Currie, J Lin, H Kim, A Angelova, G Scara, M Wissotski, W Golser, L Courtney, SS Kruchowski, TA Graves, SM Rock, S Adams, L Fulton, C Fronick, W Courtney, M Kramer, L Spiegel, L Nascimento, A Kalyanaraman, C Chaparro, JM Deragon, P SanMiguel, N Jiang, SR Wessler, PJ Green, C Soderlund, Y Yu, DC Schwartz, BC Meyers, JL Bennetzen, RA Martienssen, WR McCombie, S Aluru, SW Clifton, PS Schnable, D Ware, RK Wilson, RA Wing « view remaining 6 authors » (2009) Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS Genetics, 5(11): e1000728. (Selected as an Editors' Choice by MaizeGDB, 12/09)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000728 ]
  • Swanson-Wagner RA, R DeCook, Y Jia, T Bancroft, T Ji, X Zhao, DS Nettleton, PS Schnable (2009) Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids. Science, 326(5956): 1118-1120. (A commentary on this manuscript solicited by the editors of Science and written by C. Feuillet and K. Eversole was provided in 326: 1071-1072; Selected as an Editors' Choice by MaizeGDB, 12/09; "Recommended" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1126/science.1178294 | Cited 53 times ] Faculty1000 Recommeded Article
  • Springer NM*, K Ying*, Y Fu, T Ji, CT Yeh, Y Jia, W Wu, T Richmond, J Kitzman, H Rosenbaum, AL Iniguez, WB Barbazuk, JA Jeddeloh, DS Nettleton, PS Schnable (2009) Maize inbreds exhibit high levels of CNV and presence/absence differences in genome content. PLoS Genetics, 5(11): e1000734. (Selected as an Editors' Choice by MaizeGDB, 12/09)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000734 | Cited 124 times ]
  • Wei F, J Zhang, S Zhou, R He, ML Schaeffer, K Collura, D Kudrna, BP Faga, M Wissotski, W Golser, SM Rock, TA Graves, RS Fulton, E Coe, PS Schnable, DC Schwartz, D Ware, SW Clifton, RK Wilson, RA Wing (2009) The physical and genetic framework of the maize B73 genome. PLoS Genetics, 5(11): e1000715. (Selected as an Editors' Choice by MaizeGDB, 12/09)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000715 | Cited 54 times ]
  • Liu S, CT Yeh, T Ji, K Ying, H Wu, HM Tang, Y Fu, DS Nettleton, PS Schnable (2009) Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic markers for open chromatin across the maize genome. PLoS Genetics, 5(11): e1000733. (Selected as an Editors' Choice by MaizeGDB, 12/09)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000733 | Cited 68 times ]
  • Chou HH, A Trisiriroj, S Park, YIC Hsing, PC Ronald, PS Schnable (2009) Direct calibration of PICKY-designed microarrays. BMC Bioinformatics, 10(34).
    [ Abstract | Full Text PDF | doi:10.1186/1471-2105-10-347 ]
  • Soltis DE, RJA Buggs, WB Barbazuk, PS Schnable, PS Soltis (2009) On the origins of species: does evolution repeat itself in polyploid populations of independent origin?. Cold Spring Harbor Symposia on Quantitative Biology.
    [ Abstract | doi:10.1101/sqb.2009.74.007 ]
  • Scanlon MJ, K Ohtsu, MCP Timmermans, PS Schnable (2009) Laser microdissection-mediated isolation and in vitro transcriptional amplification of plant RNA. Curr Protoc Mol Biol, Unit 25A.3.
    [ Abstract | Full Text PDF | doi:10.1002/0471142727.mb25a03s87 ]
  • Brooks III L, J Strable, X Zhang, K Ohtsu, R Zhou, A Sarkar, S Hargreaves, RJ Elshire, D Eudy, T Pawlowska, D Ware, D Janick-Buckner, B Buckner, MCP Timmermans, PS Schnable, DS Nettleton, MJ Scanlon (2009) Microdissection of shoot meristem functional domains. PLoS Genetics, 5(5): e1000476. (Epub: 8 May 2009)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000476 ]
  • Wei Y, M Lin, DJ Oliver, PS Schnable (2009) The Roles of aldehyde dehydrogenases (ALDHs) in the PDH bypass of arabidopsis. BMC Biochemistry, 10(7).
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1186/1471-2091-10-7 ]
  • Nogueira FTS, DH Chitwood, S Madi, K Ohtsu, PS Schnable, MJ Scanlon, MCP Timmermans (2009) Regulation of small RNA accumulation in the maize shoot apex. PLoS Genetics, 5(1): e1000320. (Selected as an Editors' Choice by MaizeGDB, 6/09)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000320 | Cited 67 times ]
  • Shimizu R, J Ji, E Kelsey, K Ohtsu, PS Schnable, MJ Scanlon (2009) Tissue specificity and evolution of meristematic WOX3 function. Plant Physiol, 149(2): 841-850. ("Recommended" by the Faculty of 1000 Biology)
    [ Abstract | Full Text PDF | Supplemental Materials | doi:10.1104/pp.108.130765 ] Faculty1000 Recommeded Article
  • Jackson BG, PS Schnable, S Aluru (2009) Parallel short sequence assembly of transcriptomes. BMC Bioinformatics, 10(Suppl 1): S14.
    [ Abstract | Full Text PDF | doi:10.1186/1471-2105-10-S1-S14 ]

Current Biology 2012: Volumne 22, Issue 3


Buggs RJA, S Chamala, W Wu, JA Tate, PS Schnable, DE Soltis, PS Soltis, WB Barbazuk (2012) Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin. Curr Biol, 22(3): 248-252.

[ Abstract | Full Text PDF | Supplemental Materials | doi:10.1016/j.cub.2011.12.027 ]

Nature Genetics 2010: Volumne 42, Issue 11


Lai J*, R Li*, X Xu*, W Jin*, M Xu*, H Zhao, Z Xiang, W Song, K Ying, M Zhang, Y Jiao, P Ni, J Zhang, D Li, X Guo, K Ye, M Jian, B Wang, H Zheng, H Liang, X Zhang, S Wang, S Chen, J Li, Y Fu, NM Springer, H Yang, J Wang, J Dai, PS Schnable, J Wang (2010) Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet, 42(11): 1027-1030. (Cover image; "Recommended" by the Faculty of 1000 Biology)

Plant Journal 2010: Volumne 62, Issue 5


Fu Y, NM Springer, DJ Gerhardt, K Ying, CT Yeh, W Wu, RA Swanson-Wagner, M D'Ascenzo, T Millard, L Freeberg, N Aoyama, J Kitzman, D Burgess, T Richmond, T Albert, WB Barbazuk, JA Jeddeloh, PS Schnable (2010) Repeat subtraction-mediated sequence capture from a complex genome. Plant J, 62(5): 898-909. (Epub: 4 Mar 2010; Cover image; Selected by journal editors as a "Featured Article"; Selected as an Editors’ Choice by MaizeGDB, 9/10)

[ Abstract | Full Text PDF | Supplemental Materials | doi:10.1111/j.1365-313X.2010.04196.x ]

Science 2009: Volumne 326, Issue 5956


Schnable PS*, D Ware*, RS Fulton, JC Stein, F Wei, S Pasternak, C Liang, J Zhang, L Fulton, TA Graves, P Minx, AD Reily, L Courtney, SS Kruchowski, C Tomlinson, C Strong, K Delehaunty, C Fronick, W Courtney, SM Rock, E Belter, F Du, K Kim, RM Abbott, M Cotton, A Levy, P Marchetto, K Ochoa, SM Jackson, B Gillam, W Chen, L Yan, J Higginbotham, M Cardenas, J Waligorski, E Applebaum, L Phelps, J Falcone, K Kanchi, T Thane, A Scimone, N Thane, J Henke, T Wang, J Ruppert, N Shah, K Rotter, J Hodges, E Ingenthron, M Cordes, S Kohlberg, J Sgro, B Delgado, K Mead, A Chinwalla, S Leonard, K Crouse, K Collura, D Kudrna, J Currie, R He, A Angelova, S Rajasekar, T Mueller, R Lomeli, G Scara, A Ko, K Delaney, M Wissotski, G Lopez, D Campos, M Braidotti, E Ashley, W Golser, H Kim, S Lee, J Lin, Z Dujmic, W Kim, J Talag, A Zuccolo, C Fan, A Sebastian, M Kramer, L Spiegel, L Nascimento, T Zutavern, B Miller, C Ambroise, S Muller, W Spooner, A Narechania, L Ren, S Wei, S Kumari, BP Faga, M Levy, L McMahan, PV Buren, MW Vaughn, K Ying, CT Yeh, SJ Emrich, Y Jia, A Kalyanaraman, AP Hsia, WB Barbazuk, RS Baucom, TP Brutnell, NC Carpita, C Chaparro, JM Chia, JM Deragon, JC Estill, Y Fu, JA Jeddeloh, Y Han, H Lee, P Li, DR Lisch, S Liu, Z Liu, DH Nagel, MC McCann, P SanMiguel, AM Myers, DS Nettleton, J Nguyen, BW Penning, L Ponnala, KL Schneider, DC Schwartz, A Sharma, C Soderlund, NM Springer, Q Sun, H Wang, M Waterman, R Westerman, TK Wolfgruber, L Yang, Y Yu, L Zhang, S Zhou, Q Zhu, JL Bennetzen, RK Dawe, J Jiang, N Jiang, GG Presting, SR Wessler, S Aluru, RA Martienssen, SW Clifton, WR McCombie, RA Wing, RK Wilson « view remaining 107 authors » (2009) The B73 maize genome: complexity, diversity and dynamics. Science, 326(5956): 1112-1115. (Cover image; a commentary on this manuscript solicited by journal editors and written by C. Feuillet and K. Eversole was provided in 326: 1071-1072; cited in Wikipedia: http://en.wikipedia.org/wiki/Maize; selected as an Editors' Choice by MaizeGDB, 12/09; selected as a "must read" by the Faculty of 1000 Biology)

[ Abstract | Full Text PDF | Supplemental Materials | doi:10.1126/science.1178534 | Cited 824 times ] Faculty1000 Recommeded Article