Journal Publications
Coming soon
Skibbe DS, X Wang, LA Boursuk, DA Ashlock, D Nettleton, PS Schnable (2008) Floret-specific differences in gene expression and support for the hypothesis that tapetal degeneration occurs via programmed cell death. Journal of Genetics and Genomics, in press.
2008
Buckner B, KA Swaggart, CC Wong, HA Smith, KM Aurand, MJ Scanlon, PS Schnable, D Janick-Buckner (2008) Expression and nucleotide diversity of the maize RIK gene. J Heredity, 99(4): 407-416. (Epub: 2008 Feb 28)
Hochholdinger F, TJ Wen, R Zimmermann, P Chimit-Marolle, O da Costa e Silva, W Bruce, KR Lamkey, U Wienand, PS Schnable (2008) The maize (Zea mays L.) roothairless3 gene encodes a putative GPI-anchored, monocot-specific, COBRA-like protein that significantly affects grain yield. Plant Journal, 54(5): 888-898.
Li J, TJ Wen, PS Schnable (2008) The role of RAD51 in the repair of MuDR-induced Double-Strand Breaks in Maize (Zea mays L.). Genetics, 178: 57-66.
Jackson BN, S Aluru, PS Schnable (2008) Consensus genetic maps as median orders from inconsistent sources. ACM/IEEE Transactions Computational Biology and Bioinformatics, 5(2): 161-171.
2007
Dembinsky D, K Woll, M Saleem, Y Liu, Y Fu, LA Borsuk, T Lamkemeyer, C Fladerer, J Madlung, B Barbazuk, A Nordheim, D Nettleton, PS Schnable, F Hochholdinger (2007) Transcriptomic and proteomic analyses of pericycle cells of the maize primary root. Plant Physiology, 145: 575-588.
Kalyanaraman A, SJ Emrich, PS Schnable, S Aluru (2007) Assembling genomes on large-scale parallel computers. Journal of Parallel and Distributed Computing, 67: 1240-1255.
Zhang X, S Medi, LA Borsuk, DS Nettleton, B Buckner, D Janick-Buckner, J Beck, M Timmermans, PS Schnable, MJ Scanlon (2007) Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem. PLoS Genetics, 3(6): 1040-1052.
Li J, LC Harper, I Golubovskaya, CR Wang, D Weber, RB Meeley, J McElverd, B Bowen, WZ Cande, PS Schnable (2007) Functional analysis of maize RAD51 in meiosis and double-strand break repair. Genetics, 176(3): 1469-1482. (selected by editors as an "Issue Highlight")
Barbazuk WB, SJ Emrich, HD Chen, L Li, PS Schnable (2007) SNP discovery via 454 transcriptome sequencing. Plant Journal, 51(5): 910-918.
Ohtsu K, MB Smith, SJ Emrich, LA Borsuk, R Zhou, T Chen, X Zhang, M Timmermans, J Beck, B Buckner, D Janick-Buckner, D Nettleton, MJ Scanlon, PS Schnable (2007) Global gene expression analysis of the shoot apical meristem of maize (Zea Mays L.). Plant Journal, 52(3): 391-404.
Buckner B, J Beck, KF Browning, AE Fritz, E Hoxha, LD Grantham, ZN Kamvar, AN Lough, O Nikolova, PS Schnable, MJ Scanlon, D Janick-Buckner (2007) Involving undergraduates in the annotation and analysis of global gene expression studies: creation of a maize shoot apical meristem expression database. Genetics, 176(2): 741-747.
Li J, AP Hsia, PS Schnable (2007) Recent advances in plant recombination. Current Opinion in Plant Biology, 10(2): 131-135. (Epub: 2007 Feb 8)
Travers SE, MD Smith, J Bai, SH Hulbert, JE Leach, PS Schnable, AK Knapp, GA Milliken, PA Fay, A Saleh, KA Garrett (2007) Ecological genomics: making the leap from model systems in the lab to native populations in the field. Front Ecol Environ, 5(1): 19-24.
Emrich SJ, L Li, TJ Wen, MD Yandeau-Nelson, Y Fu, L Guo, HH Chou, S Aluru, DA Ashlock, PS Schnable (2007) Nearly identical paralogs (NIPs) and implications for maize genome evolution. Genetics, 175(1): 429-439. (Epub: 2006 Nov 16) (Selected as an Editors' Choice by Science magazine (19 Jan 2007) and MaizeGDB (Dec 2006))
Emrich SJ, WB Barbazuk, L Li, PS Schnable (2007) Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Research, 17(1): 69-73. (Epub: 2006 Nov 9)
Ohtsu K, H Takahashi, PS Schnable, M Nakazono (2007) Cell type-specific gene expression profiling in plants by using a combination of laser microdissection and high-throughput technologies. Plant & Cell Physiology, 48(1): 3-7. (Epub: 2006 Dec 5)
2006
Fu Y, TJ Wen, YI Ronin, HD Chen, L Guo, DI Mester, Y Yang, M Lee, AB Korol, DA Ashlock, PS Schnable (2006) Genetic dissection of intermated recombinant inbred lines using a new genetic map of maize. Genetics, 174(3): 1671-1683. (Epub: 2006 Sep 1)
Yandeau-Nelson MD, BJ Nikolau, PS Schnable (2006) Effects of trans-acting genetic modifiers on the rates and distribution of meiotic recombination across the a1-sh2 interval of maize. Genetics, 174(1): 101-112. (Epub: 2006 Jul 2)
Yandeau-Nelson MD, YJ Xia, J Li, MG Neuffer, PS Schnable (2006) Unequal sister chromatid and homolog recombination at a tandem duplication of the a1 locus in maize. Genetics, 173(4): 2211-2226. (Epub: 2006 Jun 4)
Skibbe DS, X Wang, X Zhao, LA Borsuk, D Nettleton, PS Schnable (2006) Scanning microarrays at multiple intensities enhances discovery of differentially expressed genes. Bioinformatics, 22(15): 1863-1870. (Epub: 2006 May 26)
Swanson-Wagner R, Y Jia, R DeCook, LA Borsuk, D Nettleton, PS Schnable (2006) All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. Proceedings National Academy Science, 103(18): 6805-6810. (Epub: 2006 Apr 25)
Maher PM, HH Chou, E Hahn, TJ Wen, PS Schnable (2006) GRAMA: A genetic mapping tool for the analysis of temperature gradient capillary electrophoresis (TGCE) data. Theoretical Applied Genetics, 113(1): 156-162. (Epub: 2006 Apr 20)
2005
Skibbe DS, PS Schnable (2005) Male sterility in maize. Maydica, 50: 367-376.
Hochholdinger F, K Woll, L Guo, PS Schnable (2005) The accumulation of abundant soluble proteins changes early in the development of the primary roots of maize (Zea mays L.). Proteomics, 5(18): 4885-4893. (an image from this manuscript was selected for inclusion on the cover)
Yao H, PS Schnable (2005) Cis-effects on meiotic recombination across distinct a1-sh2 intervals in a common Zea genetic background. Genetics, 170(4): 1929-1944.
Woll K, LA Borsuk, H Stransky, D Nettleton, PS Schnable, F Hochholdinger (2005) Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize (Zea Mays L.) lateral and seminal root initiation mutant rum1. Plant Physiology, 139(3): 1255-1267.
Fu Y, SJ Emrich, L Guo, TJ Wen, S Aluru, DA Ashlock, PS Schnable (2005) Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes. Proceedings National Academy Science, 102(34): 12282-12287.
Wen TJ, F Hochholdinger, M Sauer, W Bruce, PS Schnable (2005) The roothairless1 gene of maize (Zea mays) encodes a homolog of sec3, which is involved in polar exocytosis. Plant Physiology, 138(3): 1637-1643.
Dietrich CR, MA Perera, MD Yandeau-Nelson, RB Meeley, BJ Nikolau, PS Schnable (2005) Characterization of two gl8 paralogs reveals that the 3-ketoacyl reductase component of fatty acid elongase is essential for maize (Zea mays L.) development. Plant Journal, 42(6): 844-861.
Ding J, K Viswanathan, D Berleant, E Wurtele, D Ashlock, J Dickerson, A Fulmer, PS Schnable (2005) PathBinderH: a tool for sentence-focused, plant taxonomy-sensitive access to the biological literature. Bioinformatics, 21(10): 2560-2562.
Hsia AP, TJ Wen, HD Chen, Z Liu, MD Yandeau, Y Wei, L Guo, PS Schnable (2005) Temperature Gradient Capillary Electrophoresis (TGCE) - A tool for the high throughput discovery and mapping of SNPs and IDPs. Theoretical Applied Genetics, 111(2): 218-225.
Yao H, L Guo, Y Fu, LA Borsuk, TJ Wen, DS Skibbe, XQ Cui, BE Scheffler, J Cao, SJ Emrich, DA Ashlock, PS Schnable (2005) Evaluation of seven ab initio gene prediction programs for the discovery of maize genes. Plant Mol Biology, 57(3): 445-460.
Yandeau-Nelson MD, Q Zhou, H Yao, X Xu, BJ Nikolau, PS Schnable (2005) MuDR transposase increases the frequency of meiotic crossovers in the vicinity of a Mu insertion in the maize a1 gene. Genetics, 169(2): 917-929.