Journal Publications (2009 ~ 2013) (Showing 42 out of 131 articles)
Cited articles from Google Scholar
- (2013) Progress toward understanding heterosis in crop plants. Annu. Rev. Plant Biol., 64: 71-88.[ Abstract | Full Text PDF | doi:10.1146/annurev-arplant-042110-103827 ]
- (2013) Mendelian and non-mendelian regulation of gene expression in maize. PLoS Genetics, 9(1): e1003202. (Epub: 2013 Jan 17; Selected as an Editors' Choice by MaizeGDB, 02/13)
- (2012) Spreading of heterochromatin is limited to specific families of maize retrotransposons. PLoS Genetics, 8(12): e1003127.
- (2012) Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents. Genome Res, 22(12): 2445-2454.
- (2012) Changes in genome content generated via segregation of non-allelic homologs. Plant J, 72(3): 390-399. ("Recommended" by the Faculty of 1000 Biology)
- (2012) Ontogeny of the maize shoot apical meristem. Plant Cell, 24(8): 3219-3234. (Selected as an Editors’ Choice by MaizeGDB, 10/12; Selected by journal editors for "in brief" highlight; "Recommended" by the Faculty of 1000 Biology)
- (2012) Genic and non-genic contributions to natural variation of quantitative traits in maize. Genome Res, 22(12): 2436-2444. (Selected as an Editors’ Choice by MaizeGDB, 8/12)
- (2012) PUNCTATE VASCULAR EXPRESSION1 (PVE1) is a novel maize gene required for leaf pattern formation that functions downstream of the ta-siARF pathway. Plant Physiol, 159(4): 1453-1462. (Selected as an Editors’ Choice by MaizeGDB, 7/12)
- (2012) Parallel domestication of the Shattering1 genes in cereals. Nat Genet, 44(6): 720-724. (Epub: 13 May 2012; Selected as an Editors’ Choice by MaizeGDB, 7/12; "Recommended" by the Faculty of 1000 Biology)
- (2012) Gene mapping via Bulked Segregant RNA-Seq (BSR-Seq). PLoS ONE, 7(5): e36406. (Selected as an Editors’ Choice by MaizeGDB, 6/12)
(2012) Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin. Curr Biol, 22(3): 248-252.
- (2012) Next-generation sequencing and genome evolution in allopolyploids . Am J Bot, 99(2): 372-382.[ Abstract | Full Text PDF | doi:10.3732/ajb.1100395 ]
- (2011) Parent-of-origin effects on gene expression and DNA methylation in the Maize endosperm. Plant Cell, 23(12): 4221-4233.
- (2011) Heritable epigenetic variation among maize inbreds. PLoS Genetics, 7(11): e1002372. (Selected as an Editors’ Choice by MaizeGDB, 1/12; "Recommended" by the Faculty of 1000 Biology)
- (2011) B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize. Plant Physiol, 156(4): 1679-1690. (Selected as an Editors’ Choice by MaizeGDB, 9/11)
- (2011) An efficient and scalable implementation of SNP-Pair interaction testing for genetic association studies. Parallel and Distributed Processing Workshops and Phd Forum (IPDPSW): 523-530. (2011 IEEE International Symposium)[ Abstract | Full Text PDF | doi:10.1109/IPDPS.2011.190 ]
- (2011) Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant. Curr Biol, 21(7): 551-556.[ Abstract | Full Text PDF | doi:10.1016/j.cub.2011.02.016 ]
- (2011) SNP discovery by transcriptome pyrosequencing. Methods Mol Biol, 729: 225-246.[ Abstract | Full Text PDF | doi:10.1007/978-1-61779-065-2_15 ]
- (2010) High-resolution genotyping via whole genome hybridizations to microarrays containing long oligonucleotide probes. PLoS ONE, 5(12): e14178.
- (2010) Crop genome sequencing: lessons and rationales. Trends Plant Sci, 16(2): 77-88.[ Abstract | Full Text PDF | doi:10.1016/j.tplants.2010.10.005 ]
(2010) Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet, 42(11): 1027-1030. (Cover image; "Recommended" by the Faculty of 1000 Biology)
- (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature, 463(7282): 763-768.
(2010) Repeat subtraction-mediated sequence capture from a complex genome. Plant J, 62(5): 898-909. (Epub: 4 Mar 2010; Cover image; Selected by journal editors as a "Featured Article"; Selected as an Editors’ Choice by MaizeGDB, 9/10)
- (2010) High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing. Genetics, 184: 19-26. (Selected as an Editors’ Choice by MaizeGDB, 4/10)
- (2010) Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Molecular Ecology, 19(s1): 132-146.
- (2009) DLA-based strategies for cloning insertion mutants: cloning the gl4 locus of maize using Mu transposon tagged alleles. Genetics, 183: 1215-1225. (Selected as an Editors' Choice by MaizeGDB, 11/09)
(2009) The B73 maize genome: complexity, diversity and dynamics. Science, 326(5956): 1112-1115. (Cover image; a commentary on this manuscript solicited by journal editors and written by C. Feuillet and K. Eversole was provided in 326: 1071-1072; cited in Wikipedia: http://en.wikipedia.org/wiki/Maize; selected as an Editors' Choice by MaizeGDB, 12/09; selected as a "must read" by the Faculty of 1000 Biology)[ Abstract | Full Text PDF | Supplemental Materials | doi:10.1126/science.1178534 | Cited 824 times ]
- (2009) Loss of RNA-dependent RNA Polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes and 24-nt small RNAs. PLoS Genetics, 5(11): e1000737. (Selected as an Editors' Choice by MaizeGDB, 12/09)
- (2009) Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS Genetics, 5(11): e1000728. (Selected as an Editors' Choice by MaizeGDB, 12/09)
- (2009) Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids. Science, 326(5956): 1118-1120. (A commentary on this manuscript solicited by the editors of Science and written by C. Feuillet and K. Eversole was provided in 326: 1071-1072; Selected as an Editors' Choice by MaizeGDB, 12/09; "Recommended" by the Faculty of 1000 Biology)[ Abstract | Full Text PDF | Supplemental Materials | doi:10.1126/science.1178294 | Cited 53 times ]

- (2009) Maize inbreds exhibit high levels of CNV and presence/absence differences in genome content. PLoS Genetics, 5(11): e1000734. (Selected as an Editors' Choice by MaizeGDB, 12/09)[ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000734 | Cited 124 times ]
- (2009) The physical and genetic framework of the maize B73 genome. PLoS Genetics, 5(11): e1000715. (Selected as an Editors' Choice by MaizeGDB, 12/09)[ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000715 | Cited 54 times ]
- (2009) Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic markers for open chromatin across the maize genome. PLoS Genetics, 5(11): e1000733. (Selected as an Editors' Choice by MaizeGDB, 12/09)[ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000733 | Cited 68 times ]
- (2009) Direct calibration of PICKY-designed microarrays. BMC Bioinformatics, 10(34).[ Abstract | Full Text PDF | doi:10.1186/1471-2105-10-347 ]
- (2009) On the origins of species: does evolution repeat itself in polyploid populations of independent origin?. Cold Spring Harbor Symposia on Quantitative Biology.[ Abstract | doi:10.1101/sqb.2009.74.007 ]
- (2009) Laser microdissection-mediated isolation and in vitro transcriptional amplification of plant RNA. Curr Protoc Mol Biol, Unit 25A.3.[ Abstract | Full Text PDF | doi:10.1002/0471142727.mb25a03s87 ]
- (2009) Microdissection of shoot meristem functional domains. PLoS Genetics, 5(5): e1000476. (Epub: 8 May 2009)
- (2009) The Roles of aldehyde dehydrogenases (ALDHs) in the PDH bypass of arabidopsis. BMC Biochemistry, 10(7).
- (2009) Regulation of small RNA accumulation in the maize shoot apex. PLoS Genetics, 5(1): e1000320. (Selected as an Editors' Choice by MaizeGDB, 6/09)[ Abstract | Full Text PDF | Supplemental Materials | doi:10.1371/journal.pgen.1000320 | Cited 67 times ]
- (2009) Tissue specificity and evolution of meristematic WOX3 function. Plant Physiol, 149(2): 841-850. ("Recommended" by the Faculty of 1000 Biology)
- (2009) Parallel short sequence assembly of transcriptomes. BMC Bioinformatics, 10(Suppl 1): S14.[ Abstract | Full Text PDF | doi:10.1186/1471-2105-10-S1-S14 ]




